Spongiibacter sp. IMCC21906: IMCC21906_03116
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Entry
IMCC21906_03116 CDS
T03945
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC21906_03116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_03116
03016 Transfer RNA biogenesis [BR:
spoi03016
]
IMCC21906_03116
Enzymes [BR:
spoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IMCC21906_03116
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IMCC21906_03116
Transfer RNA biogenesis [BR:
spoi03016
]
Prokaryotic type
tRNA degradation factors
IMCC21906_03116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
S1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
AKH70756
UniProt:
A0A0F7M6H7
LinkDB
All DBs
Position
complement(3315952..3318075)
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AA seq
707 aa
AA seq
DB search
MNPVTKTFQWGSQTVTLETGRIARQASGAVLVTIDKTQVLCTVVASKSAKPGQDFFPLSV
HYQERTYAVGKIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPKGFLNEVQVVCTVMSAD
KENDPDIAALIGTSAALAVSGVPFSGPVGAARVGFTAEDGYILNPSHSQLKDGLLDMVVA
GTQDAVLMVESEAQQLSEDQMLGAVLYAHQEMQTAVQVIKELAAEAAKPSWDWQPEQEDT
ALLGAVADGFKAGLGEAYRVTDKMERYAKVGALRDQAVEQLASGEEAQYTAEDVKAVFAK
LEKQIVRQRIINGEPRIDGRDSRTVRPINVEVGVLNKSHGSALFTRGETQAIGVATLGTS
RDAQFIDALSGDFKDNFMLHYNFPPYSVGECGRMGGTGRREIGHGRLARRSLEAVLPSAE
EFPYTIRVVSEITESNGSSSMASVCVGSLSLMDAGVPLKAPVAGIAMGLVKEGERFAVLT
DILGDEDHLGDMDFKVAGTADGITALQMDIKIEGITQKIMEIALDQAQQARLHILGQMNQ
VLSISRQDVSENAPSMHVMKVDSDKIRDIIGKGGATIRAICEETEAQIDIEDDGTVRVYG
ADSASRDAAVDRILAITAEAEIGATYTGKVARIVDFGAFVTILPGKDGLVHISQISDERV
ENVSDYLKEGQDVQVKVLDVDQRGRIKLSMKEVKAEDAPASTEEGAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcccgttactaaaacattccagtggggcagccaaactgtcactctggaaaccggc
cgtattgcccgtcaggccagcggcgctgtattggttactatcgataaaactcaagttctt
tgtactgttgttgcatctaaatcagccaagcctggtcaggacttctttccgctgtcggtt
cactaccaagagcgtacttatgcggtaggcaaaatccccggcagtttctttaagcgtgaa
ggtcgtccttctgagaaagaaacactgacttcacgcctgatcgaccgtccaattcggccg
ttgtttcctaaaggttttctgaacgaagtccaagtcgtttgtactgtgatgtcggcagac
aaagaaaacgatcctgatatcgccgcattaattggcacgtctgcggcactggccgtttct
ggcgtgcctttcagtggccctgtcggtgcagcacgggttggctttacagccgaagatggc
tacatccttaaccctagtcatagccagcttaaagatggcttgctggatatggttgttgcc
ggtacgcaagatgcggtgctaatggttgaatcagaagctcagcagctaagcgaagatcaa
atgctgggtgccgtgctttatgctcaccaagaaatgcaaacagcggttcaggtcattaaa
gagttagctgcagaagccgccaaaccttcttgggactggcagccagagcaagaagatacc
gctttgctaggtgccgttgccgacggttttaaagccggcttgggtgaagcttaccgcgtt
accgataaaatggagcgttacgcaaaagtcggcgcgctgcgcgatcaagccgttgagcaa
ttagcttcgggtgaagaagcccagtacacagcagaagatgtaaaagctgtgttcgctaag
cttgaaaagcaaattgtgcgtcagcgcattatcaatggtgagccccgtattgatggccgt
gatagccgcacagtgcgcccgatcaatgttgaagtcggtgtactgaataagtctcacggt
tcagcgttgttcacccgtggtgaaactcaggccatcggtgttgctacactaggcacaagc
cgcgacgcacaattcatcgatgcgttatctggcgacttcaaagacaacttcatgctgcac
tacaacttccctccctactctgtaggcgagtgtggtcgtatgggcggcactggtcgtcgt
gaaatcggtcacggccgtttggcacgccgtagtcttgaagcagtgctgccttctgctgaa
gaatttccgtacaccattcgtgtggtctctgaaattacggaatctaatggttctagctct
atggcctcagtctgcgtgggcagcctgtcgttgatggatgcgggtgtaccgttgaaagcg
cctgttgcgggtatcgccatgggtctggttaaggaaggcgagcgtttcgccgttttgacc
gacatcttgggtgacgaagaccacctgggcgacatggactttaaagttgccggtacggcc
gacggtatcactgctttgcagatggatatcaagattgaaggcattactcagaagatcatg
gaaattgcgctggatcaggctcaacaagcccgtttgcatattctgggtcagatgaaccaa
gtactgtcgatttctcgtcaggacgtttctgaaaacgcaccgagcatgcacgtgatgaaa
gtcgattctgacaaaatccgtgacatcattggtaaaggcggtgcaacgattcgcgctatc
tgtgaagaaactgaagcccagatcgatatcgaagacgatggcacggttcgggtttacggt
gcagattctgcttctcgggatgcagctgttgatcgtattttggcgattactgccgaggct
gaaattggcgcaacctacacgggtaaagtggctcgtattgtagattttggtgcctttgtt
accattttgcctggcaaagatggtctggtgcatatctcccaaatctctgatgagcgcgtt
gaaaatgtcagcgactacctcaaagaaggtcaggatgtgcaggttaaagtgctggatgta
gatcagcgtggccgtatcaaactttcaatgaaagaagtgaaagctgaagatgcacccgct
tcaactgaggaaggcgctgagtaa
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