Spongiibacter sp. IMCC21906: IMCC21906_03236
Help
Entry
IMCC21906_03236 CDS
T03945
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spoi
Spongiibacter sp. IMCC21906
Pathway
spoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC21906_03236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoi03019
]
IMCC21906_03236
Enzymes [BR:
spoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC21906_03236
Messenger RNA biogenesis [BR:
spoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC21906_03236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
P-loop_SecA
AAA_25
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKH70873
LinkDB
All DBs
Position
3444922..3446259
Genome browser
AA seq
445 aa
AA seq
DB search
MSFAALGLSEPITRAVTELKYDTPSPIQEQAIPAIIQGRDVMAAAQTGTGKTAGFTLPLL
ERLAQGAPAGPNQARALILTPTRELAAQVAQSVDVYSKYLRLRSTVVFGGVKINPQMMAL
RKGADILVATPGRLLDLYQQRAVRFDHLEVLVLDEADRMLDMGFIHDIRKILAALPARRQ
NLMFSATFSNDIRQLAKGLVNNPIEVSVSPRNTTAETVEQWIVPVDKKRKSALLCQLVKD
ENWQQVLVFSRTKHGANKLTKQLDAAGIPAAAIHGNKSQGARTKALSEFKANKIQVLVAT
DIAARGLDISQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSADEYEHLCSIER
LIKQSLERREVEGFEPEHSLPTGRPVKAPSAPKAKPRRPRGNGGAGGQKTGGGRSDGQPR
SNRAGKPGAGRSNNSSPRQNRSGNR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgccgctttgggcctttctgagcccatcacccgcgctgttactgaactgaaa
tacgatacaccgtcacccattcaggaacaggccattcccgccattatccaaggtcgggat
gttatggccgcagcgcaaaccggcacgggtaaaaccgccggttttaccctgccgttgctt
gaacgcctggcccaaggtgcgccagcaggccccaatcaagcccgcgctcttatcttgacg
ccaacccgtgagctagcagctcaggtagctcaaagtgttgatgtgtatagtaaatatctt
cgcctgcgctccactgtcgtatttggcggcgtcaaaattaatccgcagatgatggcgctt
cgcaagggcgcggatatattggtcgccacacctggtcggctgctagatctttatcagcaa
cgggccgtccgttttgatcacttagaagtactggtgctagacgaagccgatcgcatgctg
gatatgggctttattcatgacatccgcaaaattcttgcggcgctgccagcccgtcgccaa
aacctgatgttctcggccaccttctcaaacgatattcgccagcttgcgaaaggcttggtc
aacaatccgatagaagtgtctgtcagccctcgcaacaccacggcagaaaccgttgagcag
tggattgtgcccgtagacaaaaagcgcaaatctgcattgctttgccagctggtaaaagat
gaaaactggcagcaggtactggtgttttcacgcaccaagcacggtgccaacaaacttacc
aagcaacttgatgccgccggtattcccgccgccgccattcacggcaataaaagccaaggc
gcgagaaccaaagcactaagcgaatttaaagcgaataaaattcaggtgttggtcgctacc
gatattgccgcccgcggcttggatattagccaactacctcaggtggttaactttgactta
cccaacgtgccagaagactatgttcaccgtattggccgcaccggccgggcgggcgccagt
ggtcatgccgtttcactggtcagtgccgacgaatacgagcacctctgctcgatagagcga
ctgattaaacaaagcctggaacgcagagaagtagagggctttgaacccgagcacagcctg
ccaacgggccgcccggtaaaagcccccagcgcgcccaaagccaaacctcgccgcccccgt
ggcaatggcggtgcaggtggacaaaaaaccggcggcggtagaagtgatggtcaaccccgc
agcaatcgcgctggcaaacccggtgcgggacggagcaataacagcagtccgcggcaaaac
agatcaggaaaccgctaa
DBGET
integrated database retrieval system
