Sporanaerobacter sp. UW_FK_SPOR1_1: ACFWUA_01550
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Entry
ACFWUA_01550 CDS
T11243
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spok Sporanaerobacter sp. UW_FK_SPOR1_1
Brite
KEGG Orthology (KO) [BR:
spok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spok03009
]
ACFWUA_01550 (rlmD)
Enzymes [BR:
spok01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACFWUA_01550 (rlmD)
Ribosome biogenesis [BR:
spok03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACFWUA_01550 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Cons_hypoth95
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_11
PrmA
DOT1
N6_N4_Mtase
Methyltransf_4
Ubie_methyltran
TPMT
PCMT
UPF0020
TRAM
TehB
FtsJ
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
XOQ17197
LinkDB
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Position
complement(321990..323360)
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AA seq
456 aa
AA seq
DB search
MDTSVKIGDILEGEIIDINYEGGGIVKKDNFTIFLDKGLIGDIVKYRVVKVKKTYGIGKL
LDIIKPSAYRVSSICNTSGECGGCPFQFFNYTKQLEWKEEKVKKDVEKIGGLDASIVKHI
IGMEEPYRYRNNVQIPVGLKDGEIAIGFYESGSYNIADIDNCVIQTEISNEIVKTIKNFM
KEYNLKPYDRKNRTGSIRHIGIRTNIENKAMVIIVTGSRNLPYSKELIKILTEKFKDIIS
IYQNINSGNGPVVYGEKFKKLYGEDKIIDCIGDFKFSISPNSFFQVNRVQTKILYDKVKE
YMDLKSEDIIFDLYCGIGTISLYMARQAKKVYGVEIVEEAIKDAIENARLNNIENVEFIC
GSSEKILPELKEKGIKVDKIVVDPPRKGCDRQVLDTIIEMNPERIVYVSCNPSTLARDLK
YLSENGYKIKEIQPVDMFPRSIHVECVIGMQRKDMK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggatacttcagttaagattggagatatattggaaggagaaataatagatataaattat
gaaggtggaggaatagtcaaaaaagacaatttcaccatatttttggataaaggtctaatt
ggagatattgtaaaatatagggtagttaaagttaaaaagacttatggaataggaaaactt
ttagatatcataaaaccttcagcctatagagtttcttctatttgcaatacatcaggtgaa
tgtggaggatgcccatttcaatttttcaattatacaaagcagttagaatggaaagaagaa
aaggtaaaaaaagatgtagaaaaaattggaggactagatgcaagtatagtcaaacatatc
ataggcatggaagaaccctatagatatagaaacaatgttcaaattcctgttggccttaag
gatggagaaatcgctataggattttatgaaagtggaagctataatattgcagacatagac
aattgcgtcattcaaacggaaatctcaaatgaaatagtaaaaacaataaaaaatttcatg
aaagaatataatttaaaaccttatgacagaaaaaatagaactggaagtatacgccatatt
ggaattaggacaaatatagaaaacaaagctatggtgataatagttactggttcaaggaat
cttccatattctaaagagctcataaaaatacttactgaaaaatttaaagatataataagt
atatatcaaaatataaatagtggaaatggtccagtagtatatggagaaaaattcaaaaaa
ttatatggggaagataaaataatagattgtataggagattttaaatttagtatttctcca
aattcttttttccaagtaaatagagtacagacaaagatactttatgacaaagtgaaagaa
tatatggatttgaaaagtgaggacataatatttgatttgtattgtggtatcgggactata
tcactctacatggcgagacaagctaaaaaagtatatggagttgaaatagtagaggaagca
ataaaagatgcaatagaaaatgcccgtttaaacaatatagaaaatgtagaatttatctgt
ggaagcagtgaaaaaatattgcctgaattaaaagaaaaaggtatcaaggtagataaaata
gtagtggatcctccaagaaaaggttgtgatagacaagtactagatacaataatagaaatg
aatccagaaagaatagtctatgtatcttgcaatccatcaactttagccagagatttaaaa
tacctttcagaaaatggatacaaaatcaaagaaattcaaccagtagacatgtttccgaga
agtattcatgttgagtgcgtaataggaatgcaaaggaaagatatgaagtga
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