Sporanaerobacter sp. UW_FK_SPOR1_1: ACFWUA_05725
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Entry
ACFWUA_05725 CDS
T11243
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spok Sporanaerobacter sp. UW_FK_SPOR1_1
Pathway
spok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFWUA_05725 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spok03019
]
ACFWUA_05725 (deaD)
03009 Ribosome biogenesis [BR:
spok03009
]
ACFWUA_05725 (deaD)
Enzymes [BR:
spok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACFWUA_05725 (deaD)
Messenger RNA biogenesis [BR:
spok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACFWUA_05725 (deaD)
Ribosome biogenesis [BR:
spok03009
]
Prokaryotic type
rRNA helicases
ACFWUA_05725 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
ANK_LRRK2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
XOQ17993
LinkDB
All DBs
Position
1173383..1174972
Genome browser
AA seq
529 aa
AA seq
DB search
MKKLKFEDMEFSQEIKKAVSDMGFEEASPIQSQAIPYILEGKDVIGQAQTGTGKTAAFGI
PILEMCDGDNRQLQAIVLCPTRELCIQVAEEISKLAKYKKGVYVLPVYGGQPIERQIKAL
KKGVQIVIGTPGRVIDHLNRHTLKPENIKMVVLDEADEMFDMGFRDDIELILDKMPEERQ
TIFFSATMPQEIMSFAKKFQKNPEIIKVVHKELTVPKVEQYYFELKSNMKTEILCRLIDI
YNPKLSLVFCNTKRKVDELVLELQGRGYFADGLHGDLKQTQRDKVMSTFRSGNIDILVAT
DVAARGIDVDDVDIVFNYDIPQDEEYYVHRIGRTARAGREGTAFSFVVGRDIYKLKDIQK
YTKTKIMRKDLPTLGDVEEKKIDILLDKIRHELDNEEISKYQNIIDTLLEEDYNSIDIAS
AILKMYMDENKKDGHEDLDLDVVNTGAEAGMVRLFVNIGRRENISPRHIVGAITGETSLP
RKSIGKVDIYDKFTFVEVPKEYVKEVLVGLKNHKIKGKKINIEIANPRH
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattaaaatttgaagacatggagttttcacaggagataaaaaaagctgtttcg
gatatgggatttgaagaagcatctcctattcaatcacaagctataccatatatacttgaa
ggtaaagatgtaataggtcaagctcaaacagggacaggaaaaactgcagcttttggtata
cctattttagaaatgtgtgatggggataataggcaactgcaagcaattgtactgtgtcct
actagagaattatgcatacaagtggcagaggaaataagtaaattggcaaaatacaaaaaa
ggtgtatatgtattgcctgtatatggtgggcagccaattgaaagacagataaaagctttg
aaaaagggagtacaaattgtcattgggacaccaggaagagttatagatcatttaaataga
catactttgaaacctgaaaatataaagatggtagtacttgatgaagcagatgaaatgttt
gatatgggatttagagatgacattgaacttatactggataaaatgcccgaggagagacaa
actatatttttctcagcaacgatgccacaagaaataatgagttttgcaaaaaaatttcaa
aaaaatcctgagatcataaaagtggttcataaggaacttacagtacctaaagtagaacaa
tattattttgagctaaagtcaaatatgaaaacagagatattgtgtagacttatagacata
tataatccaaaactttctcttgttttttgcaatacaaagagaaaagtagatgaacttgta
ttggaacttcaaggaagaggatattttgcagatggacttcatggagatttaaaacaaact
caaagggataaggtcatgtctacatttagaagtggaaatatagacattcttgttgcaaca
gatgtagctgctagaggtattgatgtagatgatgtggatatagtatttaattatgatatt
ccacaagatgaagaatactatgttcatagaataggaagaactgcaagggcaggaagagaa
ggtacggcttttagctttgtagtaggtagagatatatataagctaaaagatattcaaaaa
tacactaaaactaagataatgagaaaagatttacctacattaggtgatgtagaggaaaag
aaaattgatattcttttggataaaataagacatgaactagataatgaagaaatttcaaag
tatcaaaatattatagatactttgctagaagaagattacaattctatagatatagcttca
gcaatacttaaaatgtatatggatgaaaacaaaaaggatggacacgaggatttagactta
gatgtagtaaatactggtgcagaagctggaatggtaagattgtttgtaaatattggaaga
agagaaaacataagcccaagacatattgttggagcaataacaggggaaacaagtcttcca
agaaagagtataggaaaagttgatatatatgataagtttacgttcgtagaagttccaaag
gaatatgtaaaagaagttcttgtgggacttaaaaaccacaaaataaagggtaaaaaaata
aatattgaaatagcaaatccaagacattaa
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