Sporanaerobacter sp. UW_FK_SPOR1_1: ACFWUA_09925
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Entry
ACFWUA_09925 CDS
T11243
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spok Sporanaerobacter sp. UW_FK_SPOR1_1
Pathway
spok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACFWUA_09925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spok03019
]
ACFWUA_09925
Messenger RNA biogenesis [BR:
spok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACFWUA_09925
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
XOQ18792
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Position
2002139..2003803
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AA seq
554 aa
AA seq
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MAKKNSKLKIIPLGGLGEVGKNITVIEYDDDIVVIDCGLIFPEDEMLGIDMVIPDITYLL
KNREKVRAIVLTHGHEDHIGALPYVLKKINVPIYGTKLTLGLVENKFKEHNMNNVKLNII
KPNDNINLGCFNIEFIKTAHSIPDSVALAIHTPIGTVVHTGDFKIDYTPINNNMIDLHKF
AEIGSRGVLALLADSTNVERPGYTMSEKTVGATFNDIFLMADQRIIVATFASNIHRIQQI
VNSAVLFGRKVVVSGRSMVNVINVALELGYLNIPDGTLIDINDMNNFPYNEIVVITTGSQ
GEPMSALSRMAYSEHRKLELVPGDLVIISATPIPGNEKTVSRVINQLMEKGANVIYESLA
DVHVSGHACQEELKLIHTLVNPKYFIPVHGEYRHLKRHAQLAEELGMDKENIFIAQNGSV
IEFTPDSAHFGPSVTSGNILVDGLGIGDVGNIVLRDRKHLSEDGLIVVVVTISKQDGTVI
AGPDIISRGFVYVRESEDLMEESRAVVKEVLDECVKNHITDWATLKSNIRDGLRGFIYEK
IKRNPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagaaaaatagcaaattaaaaataatacctcttggaggattgggagaggttgga
aaaaatattacagttatagaatatgatgatgatattgtagttatagattgtggtcttatt
tttcctgaagatgagatgttgggcatagatatggtgataccagatataacctatctattg
aagaatagggaaaaggttagggctatagttttaactcatggacatgaagatcacatcgga
gccttgccatatgttttgaaaaaaataaatgttcctatatatggaactaagttgaccttg
ggattggtggaaaataaatttaaggaacacaatatgaacaatgtaaaattaaatataata
aaaccaaatgacaatataaatttgggatgttttaatattgagtttataaaaactgcacat
agcatacctgattctgttgcattggctatacacacacctattggtactgttgttcatact
ggtgattttaagattgattatacaccaataaacaacaatatgattgatttgcataaattt
gctgagataggtagcagaggagttcttgcccttttggcagatagtacgaatgtagaaaga
ccaggatatactatgtcagagaaaactgttggagctacatttaatgatatttttttgatg
gcagaccaaagaattatagttgcaacttttgcttcaaatattcataggattcaacaaatt
gtaaactcagccgtattgtttggaagaaaagttgtagtttcaggaagaagtatggtgaat
gtcataaatgtagcattagaacttggatatttgaacattcctgatggtacattaatagat
ataaatgatatgaacaatttcccctataatgaaatagttgtcataactactggtagccaa
ggtgaacctatgtcagccctatcaaggatggcatattcagaacataggaaattggaatta
gttcctggagatttagttataatatcagcaactcctatacctggaaatgagaaaaccgtt
tctagagttataaatcaattgatggaaaaaggtgcaaatgtaatatatgaatctttggct
gatgtccatgtatcaggtcatgcttgtcaagaagaattaaagctcattcatactcttgta
aatcctaagtatttcatacctgttcatggagaatataggcatttaaagaggcatgcccaa
ttggcagaagaattgggaatggataaagaaaacatatttatagctcaaaatggatctgtt
atagagtttactcctgattctgctcattttggaccaagtgttacttctggaaatatattg
gttgatggattgggcataggagatgttggaaatatagtgcttcgtgatagaaagcatctt
tctgaagatggtttgattgtagttgtagtgactattagtaagcaagatggtacggttata
gcaggaccagatattatatcaagaggatttgtctatgtaagagaatctgaagatctcatg
gaagaatctagagctgtagtaaaagaagtattggatgaatgtgtaaaaaatcacataact
gattgggctacgctaaaatctaatattagagatggactaagaggttttatatatgagaaa
ataaagagaaatccgatgatacttcctattatcatggaagtgtaa
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