Shewanella polaris: FH971_02945
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Entry
FH971_02945 CDS
T06579
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spol
Shewanella polaris
Pathway
spol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH971_02945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_02945
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH971_02945
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH971_02945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
UBA_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDE30022
UniProt:
A0A4Y5YB72
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All DBs
Position
690243..691499
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AA seq
418 aa
AA seq
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MSFADLSLHPTLIRRLAELNYQQATPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPIL
HYILTHQADLSAQLTSLKIHITCLVLVPTRELAQQVHRSIEQYADGSPVSSVMVYGGVSI
GMQIKQLAAGTDILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLK
RLPSTRQTLLFSATLDDRMLSFSRRLLRSPQVIEVAQRNTTANSIVERVFNVDANRKCAM
LCHLITQESWQQSLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVLAAFKAGE
VTALVATDVAARGLDINELHYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITLLSIDDEP
LLTKLEAFLDRRLPQQWLTGFEPDLDLIVPVTRKTTKSALKQQARKKALAASSRGKKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgctgatttatcattacaccccacacttattcgtcgtttagctgaactgaat
taccagcaggcgacgccgatccaactacaagctattccggtaattttaagcggcaaagat
gtcatggcaggggcgcaaacgggtactggtaaaacggccgcatttgctttaccaattctg
cattatatattgactcaccaagctgatttatctgcgcaacttacatcattaaagattcat
attacttgcttagtgttagtccccactcgggaattagcccaacaagttcaccgtagtatt
gagcaatatgccgacggcagccctgtcagtagcgtgatggtttatggtggcgtgagtatt
ggtatgcaaataaaacaacttgcagcaggaaccgatattctggtggcaacgccaggacgt
ttattagatctattacgtaagcgcgcactgtcattatcgcagttaactcatttggtattt
gatgaagccgatcgcatgttagacatgggctttaaagatgaaattgtcgaggtgctcaaa
cgcttgccaagtacacggcaaaccttattgttttcggccacgttagatgaccgcatgctc
agctttagccgacgtttattacgctcgccgcaagtgattgaagttgctcagcgtaatacc
actgccaacagtattgtcgagcgggtatttaatgttgacgctaaccgaaagtgcgccatg
ctatgccatttaatcacccaagaaagttggcaacaaagcttgatatttagccgcaccaaa
caaggtgcagatgcactagtaaagcaaatgaagcaagctggtgtagcggctgaagctttt
catgctgatttatctcaagcagtacgtgaacaagtgttagcagcatttaaagctggtgag
gtgaccgcgttagtcgcaaccgatgtggccgcaagaggcttagatattaacgagttacat
tatgttgttaatatggaattaccgtttcaagttgaagactacgtacaccgaattggccgc
acgggcagagcaggtaaagcgggccaagctattaccttattaagcatcgatgacgagcca
ttattaaccaaacttgaagcttttttagaccgacgtttaccgcagcaatggctgacgggt
tttgagccagatcttgatttaattgttccagttacccgtaaaacaactaaatctgcatta
aaacaacaagctcgtaaaaaggcattagcggcatcttcacgcggtaaaaaacgctaa
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