Shewanella polaris: FH971_03825
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Entry
FH971_03825 CDS
T06579
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
spol
Shewanella polaris
Pathway
spol03030
DNA replication
spol03430
Mismatch repair
spol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH971_03825 (holA)
03430 Mismatch repair
FH971_03825 (holA)
03440 Homologous recombination
FH971_03825 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spol03032
]
FH971_03825 (holA)
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_03825 (holA)
Enzymes [BR:
spol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FH971_03825 (holA)
DNA replication proteins [BR:
spol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FH971_03825 (holA)
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FH971_03825 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DUF4388
KaiA_N
DUF6063
TraI_2_C
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QDE30177
UniProt:
A0A4Y5YC26
LinkDB
All DBs
Position
complement(892110..893144)
Genome browser
AA seq
344 aa
AA seq
DB search
MRVYPDQLKQHLKQLPQCVLLFGDDPWLIENSKQLILNAAKKQGFEERAQLNQETGFNWG
DLIQEWQAMSLFSSRRIIELTLPQAKPAMEGASAFQTLLQHPNPDMLLIVQGPKVSAEQT
NSKWFKSLDAKGIYLPCTTPEGSQFERWLNSRITHYELTVHHDAKAMLFTLFEGNLLAAE
QAMQLLQLLSPKQHITTEQLSEYFEDQSRFSVFQLCDAILGNHQKQAQHMLAQLQAEGTA
MPIVMWALFKEINLLLSLKLAVHNGEQLSKLWSQHRIWDKRKPLYQAAITRLDLEHIEHM
LAFASTLELNLKQKGIDDWVGMSHLCILFDPRAHSRLAHIELSD
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtttatccggatcagctcaaacagcatcttaaacagctccctcaatgtgttcta
ttgtttggcgatgacccttggttaatcgaaaacagcaaacagctcattctcaatgccgct
aaaaaacaagggtttgaagagcgggcacaattaaatcaagaaacaggatttaattggggc
gatttgatccaagaatggcaagcgatgagcttattttccagtcgacgcattattgaatta
accttgccacaagctaaaccagcaatggaaggagcctcagcatttcaaacgctgttgcaa
catcctaatccagatatgctattgattgttcaaggaccaaaagtcagtgcagaacaaacc
aatagcaaatggtttaaatcacttgatgccaaaggcatatatttaccttgtaccacccca
gaaggcagccagtttgaacgctggttaaacagccgaataacacattatgagctcacggtt
catcatgatgctaaagccatgttatttacgttatttgaaggtaatttactggctgctgaa
caagcgatgcaattattacaattactcagtcctaaacaacatattacgactgaacaactg
agtgaatatttcgaagaccaatctcggttcagcgtttttcaactctgtgatgccatttta
ggtaatcaccaaaagcaagcacaacacatgctggcgcaattacaggccgaaggcaccgcg
atgccaattgtcatgtgggcattattcaaagagattaacttactactcagcctaaaactg
gcggttcacaatggtgagcaactcagtaaattatggagccaacatcgaatttgggataaa
cgtaaaccactctatcaggcggcaataacacgattggatttagaacatatcgaacatatg
ctcgcgtttgcctctacgttagaattaaatctcaaacaaaaagggattgatgattgggtt
ggcatgagccatttgtgcattttgtttgatcctcgagcccatagccgtttagcccatatt
gaattatctgactaa
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