KEGG   Shewanella polaris: FH971_03825
Entry
FH971_03825       CDS       T06579                                 
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
spol  Shewanella polaris
Pathway
spol03030  DNA replication
spol03430  Mismatch repair
spol03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:spol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FH971_03825 (holA)
   03430 Mismatch repair
    FH971_03825 (holA)
   03440 Homologous recombination
    FH971_03825 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spol03032]
    FH971_03825 (holA)
   03400 DNA repair and recombination proteins [BR:spol03400]
    FH971_03825 (holA)
Enzymes [BR:spol01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     FH971_03825 (holA)
DNA replication proteins [BR:spol03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     FH971_03825 (holA)
DNA repair and recombination proteins [BR:spol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     FH971_03825 (holA)
SSDB
Motif
Pfam: DNA_pol3_delta DNA_pol3_delt_C DNA_pol3_delta_C DUF4388 KaiA_N DUF6063 TraI_2_C Beta-lactamase2
Other DBs
NCBI-ProteinID: QDE30177
UniProt: A0A4Y5YC26
LinkDB
Position
complement(892110..893144)
AA seq 344 aa
MRVYPDQLKQHLKQLPQCVLLFGDDPWLIENSKQLILNAAKKQGFEERAQLNQETGFNWG
DLIQEWQAMSLFSSRRIIELTLPQAKPAMEGASAFQTLLQHPNPDMLLIVQGPKVSAEQT
NSKWFKSLDAKGIYLPCTTPEGSQFERWLNSRITHYELTVHHDAKAMLFTLFEGNLLAAE
QAMQLLQLLSPKQHITTEQLSEYFEDQSRFSVFQLCDAILGNHQKQAQHMLAQLQAEGTA
MPIVMWALFKEINLLLSLKLAVHNGEQLSKLWSQHRIWDKRKPLYQAAITRLDLEHIEHM
LAFASTLELNLKQKGIDDWVGMSHLCILFDPRAHSRLAHIELSD
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgcgggtttatccggatcagctcaaacagcatcttaaacagctccctcaatgtgttcta
ttgtttggcgatgacccttggttaatcgaaaacagcaaacagctcattctcaatgccgct
aaaaaacaagggtttgaagagcgggcacaattaaatcaagaaacaggatttaattggggc
gatttgatccaagaatggcaagcgatgagcttattttccagtcgacgcattattgaatta
accttgccacaagctaaaccagcaatggaaggagcctcagcatttcaaacgctgttgcaa
catcctaatccagatatgctattgattgttcaaggaccaaaagtcagtgcagaacaaacc
aatagcaaatggtttaaatcacttgatgccaaaggcatatatttaccttgtaccacccca
gaaggcagccagtttgaacgctggttaaacagccgaataacacattatgagctcacggtt
catcatgatgctaaagccatgttatttacgttatttgaaggtaatttactggctgctgaa
caagcgatgcaattattacaattactcagtcctaaacaacatattacgactgaacaactg
agtgaatatttcgaagaccaatctcggttcagcgtttttcaactctgtgatgccatttta
ggtaatcaccaaaagcaagcacaacacatgctggcgcaattacaggccgaaggcaccgcg
atgccaattgtcatgtgggcattattcaaagagattaacttactactcagcctaaaactg
gcggttcacaatggtgagcaactcagtaaattatggagccaacatcgaatttgggataaa
cgtaaaccactctatcaggcggcaataacacgattggatttagaacatatcgaacatatg
ctcgcgtttgcctctacgttagaattaaatctcaaacaaaaagggattgatgattgggtt
ggcatgagccatttgtgcattttgtttgatcctcgagcccatagccgtttagcccatatt
gaattatctgactaa

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