Shewanella polaris: FH971_08550
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Entry
FH971_08550 CDS
T06579
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spol
Shewanella polaris
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spol03016
]
FH971_08550 (rnd)
Enzymes [BR:
spol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FH971_08550 (rnd)
Transfer RNA biogenesis [BR:
spol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FH971_08550 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDE31012
UniProt:
A0A4Y5YE33
LinkDB
All DBs
Position
1947389..1948501
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AA seq
370 aa
AA seq
DB search
MLTFEYISDNASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA
ISDLSPFWKLLTDPKIVKLVHSCSEDLEVFAHYGDCQPNPLFDSQIAASLSGLGYGLGYA
KLAETCLQVEIDKGESRTDWMKRPLSDAQLQYAANDVYYLYQLYPQLQEKLAANNRLEWL
FEESQRMTEGRLSLPEGDSVYLKVKNAFQLSSPQLAYLKVLAKWRLNKAVSRNLALGFVV
KDHALIALAKKQPTTLAELSSLNDLTEQEKRIHGKELLTVMATADLTNLPEEVDVVALKS
GYKSAFKEIKTTLTELCEREDVALEFVGSKRHIHEFLLWLYHNKQTPTPLLLTGWRGQLI
GDLLADVRFS
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgttaacgtttgaatatatcagtgataacgccagcttattatcattagttgaacaatac
caacaaagcaccttattggtgctcgatactgaatttgtccgcactcgtacttactatgca
aaattggggcttattcaagcttacgatgggaaaacattggctttgatagatcctgttgcc
atttcagatcttagcccattttggaagttattgactgatcctaagattgttaaattagta
cattcttgtagtgaagatcttgaagtgtttgctcattatggtgactgtcaaccaaaccca
ctttttgacagtcaaattgctgctagtctatctgggttggggtatggcttaggttatgcc
aaattagctgaaacctgtttacaagttgaaattgataaaggcgaatcgcgtaccgactgg
atgaaacgccccttgtcggatgcacaattacagtatgcggctaatgatgtgtattatttg
taccaattatacccacagttacaagagaagcttgctgccaataatcgcctagaatggttg
tttgaagaaagccaacgtatgacagaagggcgtttgtcattaccagaaggtgacagtgtt
taccttaaagtaaaaaatgctttccagttatcgagcccacagttagcttacttaaaagta
ttggctaaatggcgcttaaacaaggcggtaagtcgtaatctcgcgcttggttttgtggta
aaggaccatgcattaattgcattagccaaaaaacaaccgaccacattagcagaattaagt
agtttaaatgatttaactgagcaagagaaacgcattcatggcaaagagttattaacggta
atggcaacagccgatttaactaatttacccgaagaagtcgatgttgttgcacttaaatct
ggttataaatcggcatttaaagaaattaaaacaacattaactgaattgtgtgaacgtgaa
gatgttgcattagagtttgtgggatctaaacgccatattcatgaatttttactctggttg
tatcacaataaacaaacgccgacgccgctattgctaacggggtggcgaggtcaacttatt
ggagacttacttgcagatgtgcgttttagttaa
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