Shewanella polaris: FH971_10355
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Entry
FH971_10355 CDS
T06579
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spol
Shewanella polaris
Pathway
spol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH971_10355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_10355
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_10355
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH971_10355
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH971_10355
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FH971_10355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
AAA_22
DUF3052
Cas3-like_C_2
DUF2164
Motif
Other DBs
NCBI-ProteinID:
QDE33218
UniProt:
A0A4Y5YKU3
LinkDB
All DBs
Position
complement(2376036..2377997)
Genome browser
AA seq
653 aa
AA seq
DB search
MALDHQGLHQLLQQQFGFDGFREGQQAVIETILSGHSALAIFPTGSGKSLCYQFCAQQLP
HLTLVISPLLALMKDQLAFLASKGIAAASIDSSLTYDQTQQVMRDVREQRTRILMVSVER
FKNERFRQFLKSVPISLLVVDEAHCISEWGHNFRPDYLKIPQYCQEFSIPQSLLLTATAT
EQVKLDMAKRFGLSTQQVIQTGFYRANLDLSVIAISQQHKLAQLVETVKEYTGAGIVYVT
LQKTAEDVAAHLIRQGINAAAYHAGMDQTVRQRIQQQFMDNQIQVIVATIAFGMGIDKSD
IRFVIHFDLPKSIENYSQEIGRAGRDGHLSHCVTLANLDGLNTVENFVYGDTPEPHNIDQ
LLTIIANETENGRWEVQESPLSTACNIRSLPLKTLFVQLELLGVIRPSYAYFAEFKYRFV
EDQQLILSRFNDDRQQFLNQIFSHTQFKKVWGALDFDSLYQQHGCDRQRVVAALDYLADQ
NSIILETKKITQVYDVQQQALATPQQLQQLTSQLSQYFSDNEHKEIVRIGKLVDFFQLDR
CLSANLAQYFDDHSVPQACGHCSVCRGQIAILSKQALAPLPDSATVTTLLEPLTLVAQAK
SLPTPSIATQAKFLAGMVMPMFSRLKVKQLEGFGRFSAYRYQDILDTVKKVNS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
ctggctcttgatcatcaggggttgcatcaattattacagcaacaatttggttttgatggg
tttagagaaggccaacaagcggttattgaaaccatattatctggtcattcagcgttagcc
attttcccgacaggttcaggtaagtcattgtgttatcagttttgtgctcagcaattacct
catttgaccttggttatttcacctttattagcattgatgaaagatcagttggctttttta
gcaagtaagggtattgcggctgccagtatcgattcaagtttaacctatgatcaaactcaa
caagtcatgcgtgatgttcgtgagcaacgcacacggattttaatggtgtccgttgaacgt
tttaagaatgaacgatttaggcaattccttaagtctgttccgatttctctgctggtggtt
gatgaagcgcattgtatttctgaatgggggcataattttaggcccgactatttaaaaatt
ccgcaatactgtcaagaattttcaattcctcaaagtttactattgaccgcaacggcgaca
gaacaagttaaattggatatggctaagcgttttggtttatcaacacaacaggtgatacaa
accggtttttatcgagctaacttagatttgtcagttattgccatcagccagcagcataag
ctcgctcagcttgtcgagaccgtaaaagagtatactggtgccggtattgtctatgtaacc
ttacagaagactgctgaggacgtagcagcacacttaatacgtcaaggtatcaatgctgct
gcttatcacgcgggtatggatcaaactgtccgtcaacgtattcaacaacaatttatggac
aatcaaattcaagtaatagtggctacaattgcatttggaatgggtattgataaatcagat
attcgatttgttattcattttgatttacctaagtctatcgaaaattatagccaagagatt
ggccgagcagggcgagatggacatttgtctcattgtgttacgttagctaacttagacgga
ttgaatactgttgagaattttgtttacggtgatacgcctgaaccacacaatattgatcag
ttgttaactataatcgcgaatgagaccgagaatggccgttgggaagtacaagaatcacca
ttgtctacagcgtgtaatattcgatcattgccgttgaaaactctctttgtgcaattagaa
ttattaggtgtgatccgtccaagttatgcttattttgcagaatttaaatatcggtttgta
gaagatcaacagcttattcttagtcgattcaatgacgatcgccagcagtttctgaatcag
atttttagccatacacaatttaaaaaggtatggggcgctctcgatttcgatagtttatat
caacaacatggctgtgatcgacagcgggttgtcgcagcattagattatttagctgatcag
aattcgataattcttgaaacaaaaaaaatcactcaagtgtatgatgtacaacagcaggca
ctagcaaccccgcagcaattacaacaattgacatcgcaactcagtcaatattttagtgac
aatgaacataaagaaattgtacggattggtaagctagtcgatttttttcagcttgatcgt
tgtttaagtgccaatttagctcaatatttcgatgatcactcggtgccacaagcctgtgga
cactgcagcgtttgtcgtgggcaaattgcaatattatcaaaacaagctttggctccgtta
ccagactcagccactgttacaacattgcttgaaccattaacgttagtggctcaggcaaaa
tcgttacccactccatccattgctacgcaggctaaattccttgctggaatggtcatgcca
atgtttagtcgcttgaaagttaagcaattagaaggttttggacgttttagtgcttatcga
tatcaagatattctggatactgttaagaaggtaaattcatga
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