Shewanella polaris: FH971_11835
Help
Entry
FH971_11835 CDS
T06579
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spol
Shewanella polaris
Pathway
spol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FH971_11835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_11835
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH971_11835
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FH971_11835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDE31597
UniProt:
A0A4Y5YG32
LinkDB
All DBs
Position
2715563..2719090
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLFSVLTPPSVKKGQQTQTLATLGGVSQAITLANLINNHPGTSIIVTHDTPSALSLEVE
LSYLLNHINVNVCLFPDRETLPYDSFSPHQDLISQRLETLANISQSQHNVVIVPVNTLMV
RLPPKSFMTANVMVLKKGDTYGLQQARQHLTDTGYHLVDQVYEHGEFAIRGSIIDIFPTG
SRQPLRIELFDDEVESIRYFDVDTQRSGMARDTIRMLPAKEFPTDNHAIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDETATLFDYLPQNSQLITIGNIEKASLAH
LHEINVRYEDRRVDPLRPLLAPKELYLLNDELFAAFKSYNRTQLLQQHIATDTNNAGEPL
AEVALPTHALIANVEKLPDINANHKLKQPLIALEEYSQKHPQLLFSAESEGRREALLDLF
AKIGIKPKLFEHLSDYLAAKDNIGLIVSPLARGCVLTDTPKGVVSIICETELFGQRISQQ
RRREKQKQVSSDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGG
DKLYVPVSSLHLISRFNASGDGDAHLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQ
ARPGEAMNIDEQEYAQFSQGFPFEETVDQESAIHAVLEDMQAPTAMDRLVCGDVGFGKTE
VAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPIVIEVMSRFRTTKEQTGVV
QQLSEGKVDIVIGTHKLLSSEANFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTA
TPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATAREAILREILRGGQVYYLH
NNVETIEKTAQNIRDLIPEARVITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGID
VPSANTIIIDRADMFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKRMTADARKRLAAIDAL
EDLGAGFLLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAY
MMSAKAEIDLRIPALLPEDYVSDVNMRLSLYKRIANCETEAMLDELKVEFIDRFGMLPTP
TRNLMAITLYKHQATALGIVKIEMHAKGGSVEFGQENHVDPMFIIGLLQNQPQIYRMDGP
NKLKFNIPAETSKERLELIKTLLEQFAKHQILETK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaacctatttagtgtactcacgccgccgagtgtaaaaaaaggccaacaaacacaaact
ttggcaaccttaggtggggtctcacaagccatcaccctagccaatttaattaataaccat
cctggcaccagtattattgtcacccatgacacgcccagtgccttgtcacttgaggtcgag
ctgagttatttattaaatcacatcaatgtgaatgtgtgcctgtttcccgaccgtgaaacc
ctgccctacgatagcttctcgccacatcaagacctgatttcccagcgactggaaacctta
gctaatattagccaaagccaacataatgtggtgattgtgcccgtaaacaccttaatggtt
cgtttaccgccaaaatcatttatgaccgctaatgttatggtgttaaaaaaaggcgacacc
tacggattacaacaagctagacaacaccttacagacacgggttatcatttagttgatcaa
gtatacgaacacggtgagtttgctatccgtggctctattattgatatttttccgacagga
tctagacaaccattacgcatagagttatttgatgacgaagttgaatcaatccgttatttt
gatgttgatacacagcgttcaggcatggcccgtgacactattaggatgttgccagcaaaa
gaattcccaaccgacaaccatgctattgaaggctttagacaacgttatcgtcgtcgcttt
gaagtgatctcaaaagaggcagaatcggtttatcaactcgtcagccgtaacttaatgcct
gcaggcattgaaaactacttaccgctgtttttcgatgaaaccgccacgttgtttgattac
ttgccacaaaacagtcaactcatcaccataggcaatattgaaaaagccagcttagcccac
ttgcatgaaattaatgtgcgctacgaagatcgacgtgtcgatcctctgcgcccattactg
gcgccgaaagaactttatctgctcaatgatgaattatttgcggcatttaaatcttacaat
cgaacccagttattacagcaacatattgctaccgacaccaataatgccggtgaaccgtta
gccgaagtcgcactaccaacacatgcccttattgctaatgttgaaaagttgccagatatc
aatgctaatcacaaactcaaacaacctcttatagcattagaagaatacagtcaaaaacat
ccacaactactgttcagtgctgaatctgaaggccgccgtgaagccttattagacttattt
gcaaaaattggcattaaacccaaactgtttgagcacctaagcgactacctagcagccaaa
gacaatatcggtttaatcgtgtcacctttagcccgtggttgtgtgttaacagacacccca
aaaggtgtcgtgagcatcatttgtgaaaccgaattgtttggtcaacgtatctcacagcaa
cgccgccgagagaagcaaaaacaagttagctcagatgtattagtcaaaaacttagccgaa
ctgaaagtcggccaacctatcgtgcatcttgaacacggtgtggcgttataccaaggattg
gaaactctcgataccggcggtttagttgctgaatatttaaaactagaatatgccggtggc
gacaaactgtatgttccggtttcatcactgcacttaattagccgttttaacgccagtggt
gatggtgatgcccatttaaataaactgggtaacgaaacctgggccaaagccaagaaaaaa
gccatagaacgaattcgggatgtagcagcagaattactcgatgtttatgcccgtcgccaa
gctcgtccgggtgaagcgatgaatattgatgaacaagaatacgcacaatttagccaaggc
tttccgtttgaagaaacggtcgatcaagaaagtgctattcatgccgtacttgaagacatg
caagcaccaaccgcgatggatcgcttagtatgcggtgatgtaggttttggtaaaacagaa
gtggccatgcgtgcggcatttgtcgctgttaatgccggtaaacaggtagtggtgttagta
ccgactactttgctggcccagcaacactacgaaaactttaaagaccgctttgccgattgg
ccgattgttattgaagtcatgtcacgctttagaaccaccaaagaacaaactggtgtggtc
caacagctttcagagggaaaagtcgatattgttatcggtacccataaattactgtcatca
gaagctaacttcgacaacctaggtttgttagtcatcgacgaagaacaccgttttggtgtg
cgacaaaaagaaaagattaaagcacttcgagccaatgtcgacattttaaccttaacggcc
acaccaattccgcgaaccctcaatatggccatgtcaggcatgcgtgatttatcgattatc
gccacgccaccagccaaacggttagcggtaaaaacttttgtacgtgaatatgataaagcc
acggcacgagaagccattttgcgtgagattttacgtggtggccaagtgtattatttacac
aacaatgttgaaaccattgaaaagaccgcgcaaaacattcgtgatttaattccagaagct
cgtgttatcacagcccatggtcaaatgcgcgaacgcgacttagaaaaagtcatgtcagac
ttttatcatcagcggtttaacgtgttggtgtgtaccaccattattgaaacgggtattgac
gtacccagtgccaataccatcattatcgaccgagctgatatgttcggtttagcacagttg
catcagctccgaggtcgtgttggacgttcacatcatcaagcctatgcctatatgatgaca
ccacatcctaaacgcatgaccgctgacgcacgtaaacgtcttgctgcaattgatgcactt
gaagatcttggcgccggttttttactggccacccaagatttagaaatccgtggtgccggt
gagttactcggtgatgaacaaagtggtcatatttcaaaaattggtttcagtttatacatg
gaaatgcttgagtctgcggtgaaagccctcaaagaaggcaaagagccttcgctagcctac
atgatgagtgccaaagcagaaattgatttacggatcccggcattattgccagaagattac
gtcagtgacgtcaacatgcgcttatccttgtataaacggattgcgaattgcgaaactgaa
gccatgcttgatgagctaaaagtcgagtttattgaccgctttgggatgctaccgactcca
acccgtaatttaatggccattaccctatacaaacatcaagcaactgcattgggtattgtt
aaaatagaaatgcatgctaaaggtggtagcgtcgaatttggccaagaaaatcatgttgat
ccaatgtttatcattggtttgttgcaaaatcagccacaaatctatcgaatggacgggcca
aataagttaaagttcaacattcctgctgagacaagtaaagagcgtcttgagttaatcaaa
accttgcttgaacagtttgctaaacatcaaattttggagactaaatag
DBGET
integrated database retrieval system
