Shewanella polaris: FH971_12115
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Entry
FH971_12115 CDS
T06579
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spol
Shewanella polaris
Pathway
spol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH971_12115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_12115
03009 Ribosome biogenesis [BR:
spol03009
]
FH971_12115
Enzymes [BR:
spol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FH971_12115
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FH971_12115
Ribosome biogenesis [BR:
spol03009
]
Prokaryotic type
rRNA processing factors
FH971_12115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDE31647
UniProt:
A0A4Y5YG76
LinkDB
All DBs
Position
2777967..2781377
Genome browser
AA seq
1136 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIGREYFPKGYSFQGRPNIKEVVQEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMSELDVPNGMGLIVRTAGVGKESTEL
KWDLKVLQHHWDAILEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KMHIGLVRPDFVERVKLYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHQVEVYIIPDANMQTP
DYRVVRRKSDDEVCESSYKRVEQPAANLYEPRKLERAASQEPALKGFASPQKAPEAPVAA
TPVAKTPTAAAPTQPGFFARIVSAISALFSDSSTDTKEVKPSTPTKNNSQTNNRRPRRND
SRNDNANRNDKRNDSRNDNRRQRNDSDKPKDGVEPRTRNKRNDRNSKTNTQDDNARNKPQ
TEKVDKPLPQTTDTKVAEAKTAEVKVSTEKSPKQEAARERRQRRNLRRKVRIENEQNEES
VVKATDTNTTDNIDKDTAAIAANVSETNTVEAKATEEKTEAKATRSRRQPRKDRSESSAE
VKNTAVSTAADNAEIAPTLSTTDMTQQAGHDQTGKDTLAKTDTVNAEQTDEQSSAVNAST
EETASQEKTVAENDDDSAEGREGQRRSRRSPRHLRAAGQRRRRDESDTTQPAVFTSVDEL
EKQLDAEQSQSKLPATKADQPTEVKVNETKTETQVAPVEVVAETKVVETPAVEAKVETKA
VETVVEAKAETKAVENVVEAKAVEPVVQPTAEKVIEPTKVVEQPVVSVTAEVKVKAEPIS
AEPARNNEREKAVASNASAPMAKPAAITRKAKPQIAPEVKVDVSETTPADVAPKTVAKTS
RFGSMVSSDMTKPTVDVREQQAVPQGRSYDAQTTEANVEKVAQGNSASSGMARPGK
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaatgcaactcaatcagaagagttgcgcgtagccctagtagat
gggcaagagctgtatgatttagacatcgaaagtccaggtcacgaacagaaaaaatctaat
atctacaaaggtaaaatcactcgagtagaaccgtcacttgaagctgcatttgttgattac
ggtgcagatcgtcacggttttttacccctaaaagaaattggtcgcgaatacttccctaaa
ggttattcattccaaggtcgcccaaacattaaagaagttgttcaggaaggccaagaagtt
atcgttcagattgataaagaagaacgtggcaacaaaggcgcagcactaacaacctttatt
agtcttgcaggctcttacttagtattaatgcctaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcaccgaactcaaagaagcgatgtctgagttagatgta
cctaatggtatgggcttaattgttcgtactgcaggtgtaggaaaagaatcaacagagcta
aaatgggacttaaaagtacttcaacatcattgggatgccattctagaagccgctcaaagt
aaagcagcaccattcttaattcatcaagaaagtaacgtgattgtacgcgctattcgtgac
tatttacgtcgtgatgttggcgaaatccttatcgatcacccacgtattttcgaagaagcc
aaaatgcacattggtttggttcgccctgactttgtagaacgcgtaaaactatacgattct
gaagtgccactatttactcacttccagattgaatcacaaattgaatcggcgttccaacgg
gaagttcgtttgccttcaggcggatcaattgttattgacccaacagaagcattaacgtct
atcgatatcaactctgcccgtgcaacaaaaggcggcgatattgaagaaactgcattaaac
actaaccttgaagcagccgatgaagtggctcgtcaattacgtcttcgtgacctaggtggc
ttagtagtaatcgactttatcgacatgacaccagtgcgtcatcagcgtgaagttgagaac
cgtttacgtgatgcagtgcatcatgaccgtgcacgcgtacaattaggccgtatttctcgt
tttggtttaatggaaatgtcacgccaacgtttacgtccttcacttgaagaatcagcggca
catatatgcccacgttgtcatggtcaaggtacgattcgaagtactgaatcattagcgctt
tctatcctgcgtttaatggaagaagaagcgattaaagagaataccacccaaatagaagct
attgtgcctgttgatgtggcggcattcttattaaatgaaaaacgtaaagcaattcgtatt
acagaagaacgtcatcaagttgaagtgtacatcatcccagatgctaatatgcaaacacct
gactaccgtgtcgttcgtcgtaaaagtgatgacgaagtctgtgaatcaagctacaagcgt
gtagaacagcctgctgcaaatctgtatgaacctcgtaaacttgaacgtgcagcttcgcaa
gaaccagcgttaaaaggcttcgcgtcaccacaaaaagcgccagaagcaccagtagctgct
actccagttgcgaaaacacctaccgctgcagcgccaactcaacctggtttcttcgctcgt
atcgtatccgctattagtgcattattttctgatagcagcaccgacactaaagaagttaaa
cccagcactccgactaaaaacaatagtcagacaaataatcgtcgtccacgtcgtaatgac
agccgcaacgataacgctaatcgtaatgacaaacgcaatgacagtcgtaatgacaatcgt
cgtcagcgtaatgacagtgataagccaaaagatggtgtagaaccgcgtactcgtaacaag
cgtaatgatcgaaatagcaaaaccaatactcaagacgacaacgcacgcaacaaaccacaa
actgaaaaagtagataagccactaccgcaaactactgatactaaagttgctgaggctaaa
actgctgaagttaaagtcagtactgaaaagtcgcctaagcaagaagccgcacgagagcgt
cgtcaacgtcgtaaccttcgtcgtaaagttcgtattgaaaatgagcaaaatgaagagtca
gttgtaaaagcaactgacactaacaccaccgataacatcgataaagacacagcagcgata
gccgctaatgtgtcagaaaccaatacagtagaagccaaagcaactgaagaaaaaacagaa
gcaaaagctactcgtagccgtcgtcagccaagaaaagaccgaagtgaatcgtctgctgaa
gtgaaaaacacggcagtttcaactgctgcagataacgccgaaatagcaccgacgctatca
acaactgacatgactcagcaagctggtcatgaccaaactggtaaagatacactagcaaaa
accgacacggtaaatgctgaacagactgatgaacaatcatccgccgtaaatgcgtctact
gaagaaactgcaagccaagagaaaacggttgcagaaaatgatgatgactcagctgaaggt
cgcgaaggtcaacgtcgtagtcgtcgtagtccgcgtcaccttcgtgctgctggtcaacgt
cgtcgtcgtgatgaaagtgacactactcaacctgcagtatttacctctgttgatgagcta
gaaaagcaactagatgccgagcaatcacaaagtaaactgcctgcaacaaaagcagaccaa
cctaccgaagtgaaagtgaacgagacgaaaacagaaacacaagtcgctccagttgaagtg
gtagcagaaactaaagtggtagagactcctgctgtagaagcaaaagttgaaaccaaagct
gttgaaactgtcgttgaagcaaaagctgaaaccaaagctgttgaaaatgtcgttgaagca
aaagctgtcgagcctgttgtacaaccaactgctgaaaaagtgattgaaccaaccaaggtt
gtagagcaaccagttgtatcggtaacggctgaagtgaaagttaaagcagaacccatcagt
gcagaaccggcacgaaacaatgaacgtgaaaaagccgttgcgtcaaatgcttctgcgcct
atggccaaacctgctgcgattacacgcaaggctaaaccgcaaatagcaccagaagttaaa
gtcgatgttagtgaaactacaccggcagacgttgcacctaaaactgttgctaaaaccagt
cgctttggttctatggtgtcatcagatatgactaagccaacagtagatgttcgtgaacaa
caagcagttccgcaaggacgttcttatgacgcacaaacaacagaagccaacgtcgaaaaa
gtggcccaaggtaatagtgcatcatcaggtatggctcgcccaggtaagtaa
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