Shewanella polaris: FH971_12410
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Entry
FH971_12410 CDS
T06579
Name
(GenBank) peptidoglycan-binding protein
KO
K21470
L,D-transpeptidase YcbB
Organism
spol
Shewanella polaris
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
spol01002
]
FH971_12410
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spol01011
]
FH971_12410
Peptidases and inhibitors [BR:
spol01002
]
Cysteine peptidases
Family C82
FH971_12410
Peptidoglycan biosynthesis and degradation proteins [BR:
spol01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
FH971_12410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Eplus_motif
Motif
Other DBs
NCBI-ProteinID:
QDE31697
UniProt:
A0A4Y5YGC0
LinkDB
All DBs
Position
complement(2844658..2846067)
Genome browser
AA seq
469 aa
AA seq
DB search
MFSKPKHSVIVSIISILLLCMSPFTAASTQDQYVNLTQHLQLQYLAEPTAQRAQYLAILQ
TGSAAEQLEYIDEIQHSVADFWHSKQVPLAFDSINDTASLLEKNIALEPIADDYLGVINS
LRKLMWLSQTQDWQAIDPGGLLRPGDSHPSIKQINQRLWLLGDANEYITDEVIYQPTLVQ
SVKRFQSRHGLKADAVIGPKTLYWLNQTPLQLASLLAISFVEKTTYVSQLSQPYLLINIP
AFQMVLVDHNQVVLASKVIVGKSYRQTPVMNGQISNVIINPTWTVPRQLLRQDILPQIRR
NGHYFADKHFDVFDYEGHRIDKTPEQWQLAAAGKFPYKVVQRPGGGNALGRYKFYFQNNQ
SLYLHDTSAPELFSRAERDISSGCVRIEKVQQLADWFANHLVLDKRTWNRLQSNYTQTQW
FSLSSTLPVHMVYWRAWVDEQQAVQYRDDIYQLAPAEPVNLLSHKVSKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaaacctaagcattctgtaatcgtaagcataataagcatattacttttgtgt
atgtcgccatttactgcggccagcactcaagatcaatatgtgaatttgactcagcactta
caattacagtatttggctgagcccaccgcacaacgtgctcaatacttagcgatattacaa
acgggttctgctgctgaacaattagaatatattgatgaaattcagcatagtgttgccgat
ttttggcatagtaaacaagtgccattggcattcgactcaataaatgacaccgcctcattg
ttagaaaagaatattgcactggaacccatcgcagatgattatcttggggtcataaattct
ctacgtaagttaatgtggttgtcacaaacccaagattggcaagctattgatcctggcggt
ctgttgcgtcctggggatagccacccaagtattaagcaaattaatcaacggttgtggtta
ttgggtgatgcgaacgaatatattactgacgaagttatttatcaaccgacattggtacaa
agtgttaagcgatttcaatctcgtcatgggttaaaggctgatgctgttattgggcctaaa
acgttatactggctaaatcaaactcctttgcaactcgcttctttattggcaataagtttt
gttgaaaaaacgacctatgtaagccaactatctcagccttatttgttgattaacattccc
gcttttcaaatggtgttagttgatcacaatcaagtggtgttggcatccaaagtgattgtg
ggtaagtcatatagacagactccagtgatgaatgggcaaatttcaaatgtcatcattaat
ccgacttggacggttcctcgacagttattacgccaagacattttgccgcaaattaggcga
aacggtcattactttgccgataaacattttgatgtgtttgattatgaaggccatcgtatt
gataaaacacccgaacaatggcagctggctgcagcagggaagttcccttataaagttgtg
caacgtcctggtggtggtaatgcattaggccgttataaattttactttcaaaataatcaa
agtttgtatttacatgatacatcagccccagagctgttttcacgtgcggaacgagatata
tcatcaggttgtgtgagaattgaaaaagtacaacagttggcagattggtttgcaaaccac
ttagtccttgataagcgtacttggaatcgcttgcagtctaattatactcaaactcaatgg
ttttctctatcgtccacgttacctgtacacatggtgtattggcgtgcttgggtggatgag
cagcaagccgtgcagtatcgtgatgatatttatcagttagcaccagcagaacctgtcaat
ttattaagccataaagtctccaaaaaataa
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