Shewanella polaris: FH971_13240
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Entry
FH971_13240 CDS
T06579
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spol
Shewanella polaris
Pathway
spol03030
DNA replication
spol03430
Mismatch repair
spol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH971_13240 (dnaE)
03430 Mismatch repair
FH971_13240 (dnaE)
03440 Homologous recombination
FH971_13240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spol03032
]
FH971_13240 (dnaE)
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_13240 (dnaE)
Enzymes [BR:
spol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FH971_13240 (dnaE)
DNA replication proteins [BR:
spol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FH971_13240 (dnaE)
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FH971_13240 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QDE31838
UniProt:
A0A4Y5YGV1
LinkDB
All DBs
Position
complement(3043315..3046791)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNNA
GIKPIVGADFWVQTPGFEKEFCALTIIAMDNEGYQNLTQLISEAYLRGHVDNRVVIDQDW
LIKFNRGLIILSGAKDGDVGKALLKGNQHQVESLITFYQQHFEDRYYIELIRTGRAHEER
YLHMAVELASEKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDPRRPKTYSDQQYL
RTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLHEYFLPNFPTGDLSIEDFLVTASEKGL
EERLEFLFPDPQVRLEKRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWGKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLIPAEPGMTLAKAFEVEPA
LPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITDFAPLYCDAEGLNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRQIKEGKEPVRIEAIPLADPACFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDAEYQHESLKELLAPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAINNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVDDDLNIVYGIGAIKG
VGEGPVESILEARKDSPFTDLFDFCARVDLKKLNKRVIEKLILAGALDTLGPHRASMMAT
LPEAISAAAQHAKAEAIGQHDMFGLLNSEPEDSKQNFVQCTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATRVMITKRGSKMGLVTLDDK
SARLEVMLFTEPFEKFGHMLEKDRILICEGDVSFDDFSGGNRMNARNIIEIGEARSHFAK
AVEINVHGDDVTPDWLETFEQTLTPWRNGAVPVVINYTKQQASGKIMLGEEWRVNPSDEL
MLALESMLGSTNVKIVFN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgttcatttgcgtgtccacagtgattattcaatgtcagatggc
gttgccaaagtgaaacctatcattgccgccgctgaaaatcaggggatggccgcgatagca
ttaaccgatcaaaacaacttctgcggtttggtaaagttttatggagcttgtaataatgct
ggtattaaacccattgtaggtgccgatttttgggtgcaaaccccaggttttgagaaagaa
ttttgtgccttaaccattattgccatggataacgagggctatcaaaatctgactcaattg
atcagtgaagcctatcttcgtggacatgtcgataatagagttgtgatagatcaagactgg
ctaatcaaatttaaccgtggtttgatcattctttcaggcgccaaagatggtgacgtcggt
aaggcattactaaaaggcaatcaacatcaagttgagtcactgattactttttatcaacaa
cattttgaagatcgttattatatagagcttatccgtactggtcgtgcacatgaagaacgc
tatttgcacatggcggttgagctagcatcggaaaaagggttgcctgttgtcgccactaac
caagtggtatttttaaaacaagatgattttgaagcacatgaaattcgtgtcgctattcat
gatggttttaccttagtcgacccacgacgtcctaaaacctacagcgatcaacaatacctg
cgcaccgaagacgagatgatcgccttgtttgccgatattccatcggccattcaaaatagt
gtcgaaattgctaagcgctgtaacgtcactattcgtttacatgaatactttttacctaat
ttcccgaccggcgatttatcgatagaagacttcttagttactgcctcagaaaaaggctta
gaagaacgtctcgaatttttattccctgatccgcaagttcgcctcgagaaacggccagag
tatgacgaacgtctcgagattgaactgaaagtgattaaccaaatgggtttcccaggttac
ttccttattgtgatggagtttattcagtggggtaaagacaacgatattccagtcggtcca
ggtcgtggttctggtgcgggttcgttagtggcatacgcactaaaaattactgatttagac
ccacttgaatatgacttactgttcgagcgtttcttgaaccctgaacgagtatcgatgccc
gatttcgacgtcgacttttgtatggaccgccgtgacgaggtaattgatcatgtcgctgaa
ctctatggccgtgaagcggtatcgcaaattattacctttggtaccatggcagcaaaagct
gtggtacgagatgttggccgcgtattaggtcatccatatggctttgttgaacgtctaacc
aaattaatccccgctgaaccagggatgacattggctaaagcctttgaagttgaacccgcg
cttcctgaagcctatgacggtgatgaagacgttaaagagcttatcgacatgtgtcgccgt
ttagaaggtgtgacacgtaacgcgggtaagcatgccggtggtgtggtaattgcccccacc
cgaattacagatttcgcgcctttatattgcgacgccgaaggcttaaaccctgttactcag
tttgataaaaacgatgtagaaactgcgggtttggttaagttcgatttcttgggcttacgt
accttaaccattattgattgggcgttgcagatgattaatccgcgccaaattaaagaaggt
aaagaacccgtacgtatcgaagctattccacttgctgatcctgcctgttttagattattg
cagcgctacgaaaccaccgcggtattccagctcgaatctcgtggtatgaaagacttaatt
aaacgtctgcaacctgattgtttcgaagacatgattgcactggtagcactgttccgccca
ggtcctttgcagtcaggcatggttgacaactttattgagcgtaagcatggccgtgaagaa
gtttcatatcccgatgctgaatatcagcatgagtctttaaaagagctgctagcacccacc
tacggtattattttgtaccaagagcaggtgatgcaaattgctcaggtattgtcaggttac
accctaggcggcgcagatatgctgcgtcgtgcaatgggtaagaaaaaacctgaagaaatg
gccaagcagcgtggcacctttaaagaaggggctattaataacggcatcgatggcgacttg
tcgatgaagatcttcgatttagtagaaaaatttgctggttacggttttaacaaatcgcat
tcagctgcctatgctttggtgtcgtatcaaaccctgtggttaaaaacccatttcccatcg
cagtttatggccgcggtaatgtctgccgacatggacaacaccgataaaattgtcaccttg
gtagatgaatgtgagcgcatgggcttaccgttaattccgccagacgtgaacaaaggctta
tttaaatttactgtcgatgatgaccttaatattgtttacggtattggtgcgattaaaggt
gtgggtgaaggccctgtagaatcaattttagaagcacgtaaagacagtccatttaccgac
ttatttgatttttgtgcccgtgtggatttgaaaaagctcaacaaacgagtgatcgaaaaa
ttgattttagcgggcgccttagacacgttagggccgcatcgcgcatcaatgatggcaacc
ttgccagaggctattagtgccgcagcacaacacgcaaaagcagaagccattggtcagcat
gacatgtttggtttgctcaatagtgagcctgaagacagtaagcaaaactttgttcaatgt
acaccatggccagataaaatttggctagaaggtgagcgtgaaaccttagggctttatctt
actggtcatcctatcaaccagtatttaaaagaacttaagcaatacactaatggccgctta
aaagacattcacccaaccgagcgcggtaaaaccgttaaagcggcgggattagtggtggct
acgcgagtcatgatcactaagcgtggctcaaaaatgggtttagtcacgttagatgataaa
agtgcccgtttagaagtgatgttatttaccgaaccgtttgaaaagtttggccacatgctt
gaaaaagatcgcattcttatttgtgaaggtgatgtcagctttgatgatttttctggcggc
aatcgcatgaacgcgcgcaatatcattgaaattggtgaagcgcgcagtcactttgccaaa
gcggtagaaatcaacgttcatggcgatgatgtcacccctgattggctagaaacctttgaa
caaacattaacaccgtggcgtaatggcgccgtgcctgttgtgattaactacaccaaacaa
caagccagtggcaaaatcatgttaggtgaagaatggcgagtgaaccctagtgatgaatta
atgctagcgctagaaagtatgcttggttcaaccaacgtcaaaatcgtgtttaattag
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