Shewanella polaris: FH971_14840
Help
Entry
FH971_14840 CDS
T06579
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spol
Shewanella polaris
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spol03009
]
FH971_14840 (rlmD)
Enzymes [BR:
spol01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FH971_14840 (rlmD)
Ribosome biogenesis [BR:
spol03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FH971_14840 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
MTS
Methyltransf_11
PCMT
RrnaAD
Methyltr_RsmB-F
Methyltransf_15
Cons_hypoth95
Methyltransf_23
TehB
Methyltransf_12
UPF0020
PrmA
Ubie_methyltran
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QDE32122
UniProt:
A0A4Y5YH41
LinkDB
All DBs
Position
complement(3420516..3421877)
Genome browser
AA seq
453 aa
AA seq
DB search
MAQFFQAKPNKSKQLSAKLSLSITQLDHLGAGIAQHQGKVVFIPGVLPGETATVQFVEQK
KSYAKAKLIAIDLASADRVKPHCPHYHQCGGCDLQHMDINAQRDHKQAALVDLISKLSSA
EAIDADIIAKPIVGDAWHYRRRARLATLFDKNTRRLQLGFRAGNSNKIVSIEQCPVLAES
LSALITPLAVNLNQLKAKSSLGHVELTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQL
HFLLQDDEGQLTQLYPLLQADDEVTLPYYHLAQESVRCSFTPGNFVQINEVINQAMVDQA
IKWLEPQAGERILDLFCGVGNFSLPLALKAAEVIAVEGVPEMVQQAKQNAVDNQLDNVSF
YHADLSADLSTQTWLGKIDKLLLDPARAGAFESLQWLQKMQPKKVVYVSCNPASLARDSS
VLLANGYQITQVGLVDMFPQTHHIEAMVLFELQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatttttccaagcaaaaccgaacaaatctaagcaattatcagcaaagctaagc
ctcagcattactcaacttgatcatttaggtgccgggattgcgcaacatcaaggcaaagtg
gtgtttattcctggcgtgttacctggcgagaccgccacggtacaatttgtggaacaaaag
aaaagctatgctaaagccaagctaatcgctattgatcttgcatccgctgatagagtcaaa
cctcattgcccgcattatcatcaatgtggcggttgtgatttacaacatatggacatcaat
gcgcaacgcgatcataagcaggctgctttggtggaccttattagcaaactgtcgagtgca
gaagccattgatgccgatattattgctaaacccatagtgggcgatgcgtggcattaccgt
cggcgcgcaaggctggcaacattatttgataaaaatactcggcgtttacaacttgggttt
cgtgcaggcaatagcaataaaattgtttctattgaacagtgtccagtattagcagagtcg
ttgtcggcattaattacaccattggcagttaatttaaatcaacttaaagccaagtctagt
ttaggtcacgttgaacttacccaggccgataacggtaattttgcggtgttaagagtgact
aaagtattgcctgcatcagatattcgttggttaacgggttttgctgaaaaacatcaactg
cactttttattgcaagatgatgaagggcagttaactcaactgtatccgttattacaagct
gatgacgaggtaacgctaccttattatcatctggcgcaggagtctgtacgttgctcgttt
acaccaggtaattttgttcagataaacgaagtcattaatcaggctatggtggatcaagcc
atcaaatggttagagcctcaggccggtgagcgtattttagatttgttttgtggtgtaggt
aacttcagtttaccgttggcattaaaagcggcggaggttatcgctgttgaaggtgtgccc
gaaatggtgcaacaagccaagcaaaatgcggtcgacaaccaactggataatgtcagtttt
tatcatgcagatttaagtgccgatctatcaacgcaaacttggttaggcaaaattgataaa
ctattacttgatcctgctcgagcgggcgcgtttgaaagtttacagtggttacagaaaatg
caacctaaaaaagtggtatatgtttcatgtaatccagccagtttagcgcgtgacagtagt
gtattattagctaacggttatcaaattacccaagttggattagtggatatgtttccacag
acacatcatattgaagccatggtgttatttgaattacagtaa
DBGET
integrated database retrieval system
