Shewanella polaris: FH971_15070
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Entry
FH971_15070 CDS
T06579
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spol
Shewanella polaris
Pathway
spol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH971_15070 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_15070 (pnp)
03016 Transfer RNA biogenesis [BR:
spol03016
]
FH971_15070 (pnp)
Enzymes [BR:
spol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FH971_15070 (pnp)
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FH971_15070 (pnp)
Transfer RNA biogenesis [BR:
spol03016
]
Prokaryotic type
tRNA degradation factors
FH971_15070 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QDE32165
UniProt:
A0A4Y5YHR7
LinkDB
All DBs
Position
complement(3475025..3477121)
Genome browser
AA seq
698 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRGFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPTVDQLATSSLNLVVAG
TKGAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPMWEWTAPVQDPV
LVAKIKELAEVGMTEAYQIEVKQDRYVQVGIVKDAAKAALVAENPEVDTREVDNLLGSLE
KSVVRGRIINGKPRIDGREPDMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGMNAVMPSAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISAHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSN
GEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccttagaaacgggt
gttattgcacgtcaagcagatgctgcagttttagcaagcatgggcgataccacagtatta
gttactgtagtgggtaaaaaagtagcggatctaagccgtggttttttccctctaacggtt
aattatcaagaaaaaacctatgctgcaggtaaaatccctggtggtttcttcaagcgtgaa
ggtcgtccttcagaagatgaaactctgattgcacgtctaattgaccgtcctattcgtcct
ttatttcctaacggttttaaaaacgaagttcaagttatcatcactgtagtttcagttgac
ccacaaatcgaaccagatattgtttcaatgattggtacttctgcggcacttgctatctct
ggtatccctttcagtggcccacttggcgctgcacgtgttggttacatcgacggtgaatat
gtactgaacccaactgttgatcagcttgctacaagttcacttaacttagtggtagcgggt
actaaaggtgctgtacttatggttgaatctgaagctaaagcgcttgcagaagaaatcatg
ttaggtgctgtaacttacggccatgatcaacaacaagtcgttgttgatgccattgctgag
ttcaaggctgaagccggcaaaccaatgtgggaatggactgcaccagttcaagatcctgtg
ttagttgccaaaattaaagaacttgctgaagtaggcatgacagaagcttatcaaattgaa
gttaagcaagaccgttatgtacaagtcggtattgttaaagacgcagctaaagcagcatta
gttgctgaaaatccagaagttgatactcgcgaagtagacaacttacttggtagcttagag
aaaagtgttgtacgtggacgtattattaatggtaagccacgtatcgatggtcgtgagcca
gacatgatccgcgcattaagtgttttagctggtgtacttccacgtacacacggtagttca
ttatttactcgtggtgaaactcaagctctagtaacctgtactttaggtactgaacgtgat
gctcagaaaattgatagcattatgggcgaacgtactaatcgttttatgcttcactataac
ttccctccgtattctgttggtgaaacaggtatggttggctcacctaagcgccgcgaaatc
ggtcatggtaagttagcatggcgtggtatgaatgctgttatgccttcagctgaagaattt
ccatacagcattcgtgttgtatctgaaattactgaatctaacggttcaagctcaatggct
tctgtatgtggtacttcattagcattaatggatgcgggtgtaccaattaagtcgtcggtt
gcaggtattgcaatgggactagttaaagaaggtgacgatttcgttgtactttctgacatc
ctaggcgatgaagatcacttaggtgatatggactttaaagtagcgggtactcgtgacggt
attactgcattgcagatggatattaagatcgaaggcattactaaagagattatggatatc
gcgttgcagcaagcttatggtgcacgtgttcatatcttaaacgtaatggatcaagctatt
ggttcacatcgtgatgatatttctgcccatgctccacgtattacgactatcaagattaat
ccagaaaaaatccgtgatgtcattggtaaaggcggtgcggtaattcgcgcgctaaccgaa
gaaactggcactacgattgagctagatgataatggtactgttaagattgcatcttcaaat
ggtgaagcaactaaagaagctatccgtcgtattgaagaaatcactgctgaagttgaagtg
ggtcgtatctataacggtaaagttatccgtatcgttgatttcggtgccttcgttaacatt
cttccaggtaaagatggtttagtacacatctcacaaatcagtgacgaacgtgtagcaaat
gtatctgaccatttagaaatgaaccaagaagttgctgttaaggtaatggaagtggatcgt
caaggtcgtgtaagattatcaattaaagaagctcaagcaaaagaaactgctgagtaa
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