Shewanella polaris: FH971_16605
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Entry
FH971_16605 CDS
T06579
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
spol
Shewanella polaris
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spol03009
]
FH971_16605 (srmB)
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH971_16605 (srmB)
Ribosome biogenesis [BR:
spol03009
]
Prokaryotic type
rRNA helicases
FH971_16605 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
7TM_GPCR_Sra
Motif
Other DBs
NCBI-ProteinID:
QDE32437
UniProt:
A0A4Y5YIC3
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All DBs
Position
3823530..3824750
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AA seq
406 aa
AA seq
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MQFEDFQLDPSLLESLKAMGHNTPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRFEGQARILVLTPTRELASQIHRYASHLATGLDLNIVIITGGVPYGPQEEAL
ENNVDLLIATPGRLMEYLDKDKFDATEVEILIIDEADRMLDMGFSSVVQSIAIEAQGRKQ
NMLFSATLEGNGVNRFARELLNDPIMVDVEAPRSEKAKVHQWIHLADDQAHKFALLCHIL
QQENVKRTIVFVKTREMVASLEGLLLKANIPCAFMRGDMEQKKRFQALGRFSKGEVNVLL
ATDVAARGIDVDDITHVINFDMPRSADAYVHRIGRTARAGAKGTAISLVEAHDMRIISKI
ERYIELPLKRRVIEELRPKHKEAKVPGKKKANAKDARVKSKKYKKK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccagctcgaccctagcttattagagtcactcaaggccatggga
cacaacacccctaccaccattcagcagcaaaccattccattggccatggatcagcgggat
attttagcgcgtgcgccaaccggcacgggaaaaacggccagctttttactgcccgcattg
caacatttaatcgatttcccgcgtcgttttgaaggtcaagcacgtattttagtgctaaca
ccaactcgcgaattagccagtcaaattcatcgttacgccagccatttagccactggactc
gatcttaatatcgtcattattactggcggtgtgccatatggcccacaagaagaagcatta
gaaaataacgtcgacttgttaatcgccaccccgggtcgattaatggaatacttagacaaa
gataaatttgacgccactgaagttgaaattttaatcattgatgaagctgaccgtatgctt
gatatgggattttcatcagtggtgcaatctattgccattgaagctcaaggtcgcaaacag
aatatgttgttttctgccacgcttgaaggcaatggtgtaaaccgatttgctcgtgaattg
ttaaacgatccaatcatggtagatgtagaagcaccacgcagtgaaaaagccaaagtgcat
caatggattcacttagctgatgatcaagcgcataaatttgcattgttatgccatattctt
caacaagaaaatgttaaacgcaccatagtgtttgtaaaaacacgcgaaatggttgctagt
ttggaagggttactactaaaagccaatattccttgtgcatttatgcgtggcgatatggaa
cagaaaaaacgcttccaagcacttgggcgtttttctaaaggcgaagtcaatgtgttattg
gctaccgatgtagcagctcgaggaattgatgttgatgatattacccatgtgattaacttt
gacatgccccgctctgctgatgcgtacgtccatcgaattggccgcactgcacgcgcaggc
gccaaaggaaccgcaatctcattggttgaagcacacgatatgcggattatctctaaaatc
gaacgttatattgagttgccacttaaacgccgtgtcattgaagagctccgccctaaacac
aaagaagccaaagtgccaggtaagaaaaaagcgaatgccaaagatgctcgagtgaaatcg
aaaaagtataagaaaaaataa
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