Shewanella polaris: FH971_16985
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Entry
FH971_16985 CDS
T06579
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
spol
Shewanella polaris
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_16985 (hrpB)
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FH971_16985 (hrpB)
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FH971_16985 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
AAA_22
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDE33308
UniProt:
A0A4Y5YL41
LinkDB
All DBs
Position
complement(3908325..3910871)
Genome browser
AA seq
848 aa
AA seq
DB search
MTTKLPIHAVLNALREQFATHSQIILEAPTGAGKSTALPLAMLAWPEISGKILMLEPRRV
AARNVAQFIAKQLGQPVGQLVGYRVRGESKVSADTRLEIVTEGILTRMIQQDPELSGIDV
IIFDEIHERHLPTDLGLALALEVQQSLRDDLHIIAMSATLSGLPLDTLMPDAAKIHSDGR
SFAVEIAYQPCPSQQMWLTHMSRVIIDIISDSNLTPYQQGSVLAFLPGKGEIRKLAGLLR
QRLDASWLICPMYGDLSSAEQDLAIRAAEPGKRKIVLATNVAESSLTIEGITLVIDSGYR
REASFNPKTGVTRLGLKRISQASAIQRSGRAGRLAAGYCVRLWSQEEQGRMRNVDEPEIT
QAELTAMALDCANWGAKSFAELSLLTPPPQIHEQVAWRLLIQLELIDQQHKLTPLGREAY
ALGCHPRLAHMLLKAKQLALQDNQPQLCLLACVLAGIIEARGLPKKGADIHHYLTEALQG
QIKQQVRQWQQSLAISGQVNEAIRNASTRDISYLLALAYPDRIAKARGHEGFLLSNGTGV
VINADDSLAHEPWLVVADFQETQGRNAGQVYLATKLDERLFTAELASLVTTHIHGGWDEA
KGRFFAEKHTKIGEVIIKTDTGITPEPAQIIAALLEQVRIKGLTILNRDDKLIQLQYRVE
LARHFTPEHDWPCLTDEHLLATLEDWLGPYLDNIRSLAALTKVGAYGLVKNLLNWQQQQL
LEQLVPTHWPMATGTRAPIRYQMPLDVDGHFYHNAEQQGRALLSVRLQEALGLAQSPTIL
HGKMTVTMELLSPAQRPLAATADLASFWQGPYMDVKKEMRGRYPRHLWPDDPVNTVATKY
TKKKTPGM
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgaccactaaattacctattcacgcggtgctcaacgcattacgcgagcagtttgccacc
cattcacagattattcttgaagcacctaccggcgcgggtaaatcaacggcattgccattg
gccatgttagcttggcctgaaattagtggcaaaattctgatgcttgaacctcgtcgagtc
gccgccagaaatgttgcacaatttatcgctaaacaattgggacaaccagttgggcaactg
gtgggttatcgtgtgcgcggcgagtcaaaagtcagcgcagatactcgtttagaaattgtt
accgaaggtattttgacccgaatgatccagcaagatcctgaactgagtgggattgatgtg
attattttcgatgaaattcacgagcgtcacctccctaccgatttaggcttggctttagca
ttggaagtacagcaatcattacgtgacgatttacacattattgctatgtcagccaccttg
tcgggtttgccattagacaccttgatgcctgatgctgcgaaaatacacagcgatggccgt
agttttgccgttgagattgcttatcaaccttgccctagccaacagatgtggctaacgcac
atgtctcgtgtgatcatcgatatcatttcagactccaatctaacgccatatcagcaaggt
agtgtgctcgcatttttacctggtaaaggtgagatccgtaaattagccggactattacgt
cagcgtttggatgcatcatggcttatttgtcctatgtatggcgacttgtcgtcagcggag
caagatctcgccattcgcgctgcagaaccgggtaaacgtaaaatcgtcctcgcgaccaat
gtggctgaatcaagtttaacgattgaaggtattacccttgtcatagacagtggttatcga
cgtgaagcgagttttaaccctaaaaccggcgtgacacgcttagggcttaagcgtattagc
caagcctcggcaattcagcgtagtggccgtgcagggcgtttagcagctggttattgcgtg
cgtttgtggagccaagaagagcaagggcgaatgcgtaacgttgatgaacccgaaatcact
caagcagagctcactgcaatggcgcttgattgtgccaattggggggctaaatcatttgcc
gaattatcgctgctcacaccaccgccgcagatccatgaacaagttgcttggcggttactc
attcaattggaattaattgaccagcaacataagttaacaccacttggtcgagaggcttat
gcattaggttgccatccgcgcttagcgcatatgctgcttaaagctaaacaacttgctttg
caagacaatcagccacagctttgtctgttagcatgcgttttagcaggcattattgaagcc
cgtggattaccgaaaaaaggcgctgatattcatcattatttgaccgaggctttgcaggga
cagattaaacaacaagtaagacaatggcagcaatctttggcgatatcgggacaggtaaat
gaagcaatacgtaatgcatccacacgtgatattagttatttgttagcacttgcttaccca
gatcgtattgccaaagcccgtggtcatgaaggctttttattgagtaatggtactggtgtg
gtgatcaatgccgatgatagtttggctcatgaaccttggttagtggtcgctgactttcaa
gaaactcaagggcgtaatgccggccaagtgtaccttgctaccaaattggatgaacgctta
tttacggcagagcttgcttcgttagtaaccactcacattcacggtggttgggatgaagca
aaagggcggttttttgctgaaaaacataccaaaatcggtgaggttattattaaaaccgat
actggaattacaccagagcccgcacagattatcgccgcattattggaacaggtccgcatt
aaagggttaacaattcttaatcgtgatgacaaattaatccagttacaatatcgggttgaa
ttagcacgtcattttacaccagagcatgattggccttgcttaaccgatgagcatttatta
gcgacactagaagattggcttgggccctatttagataacattcgctcactggccgcgtta
actaaggttggtgcttatgggttggtgaaaaacttactcaactggcaacagcaacagcta
ttagaacaattggtgccgacacattggccgatggcaacaggcactcgtgcccctattcgt
taccagatgccattagatgttgatgggcatttttatcataacgccgaacaacaagggcga
gctttattaagtgtacgattgcaagaagcgttaggcttagcgcaaagcccgaccatatta
cacggcaaaatgacggtgacaatggagctattatcgccagcacaaagaccattagcagcc
acagctgatttagcaagtttttggcaaggtccttatatggatgtaaaaaaagaaatgcgc
ggtcgttatccaaggcatttatggccagatgatcctgtgaacacagtagcaaccaaatat
actaaaaagaaaacgcctggcatgtaa
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