Shewanella polaris: FH971_19435
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Entry
FH971_19435 CDS
T06579
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spol
Shewanella polaris
Pathway
spol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH971_19435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spol03021
]
FH971_19435 (rpoC)
03400 DNA repair and recombination proteins [BR:
spol03400
]
FH971_19435 (rpoC)
Enzymes [BR:
spol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FH971_19435 (rpoC)
Transcription machinery [BR:
spol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH971_19435 (rpoC)
DNA repair and recombination proteins [BR:
spol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH971_19435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF2267
Motif
Other DBs
NCBI-ProteinID:
QDE32949
UniProt:
A0A4Y5YKC3
LinkDB
All DBs
Position
complement(4444395..4448621)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLEEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGLGEGMAFSDVSEVEKAYATG
VAELHARVKVRITETHIAEDGERTKATRIIDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVAEAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVPEQQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGVEHGLTMKPLIEGGDVVEPLRERVL
GRVVALDVMKPGTNEVLAPRNTLLDEAWCNTLEDHSIDEVIVRSVITCETDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEVLEDCDVAAGQIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLEVGARTSAGKELRPAIRL
VDADGNDLKIPGTEVPAQYFLPGHAIVSKDDNAKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSTGDTDFLEGEQAEVARVKIANRELIAQGKTPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHIARNEERAKAASSR
GKVATTTVTASEAEQNLADLLNLAGSQD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaagcagcaaagtaagactgaagaatttaacggtata
aaaattggtttggcctcgccagatctaatccgttcttggtcttttggtgaagtaaagaag
ccagaaaccattaactaccgtacattcaagcctgaacgtgaaggtttgttctgtgcgcgt
atcttcggtccggttaaagattacgaatgtttgtgtggtaaatacaagcgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgaa
cgcatgggtcacattgatttggcaagcccagtcgcccacatttggttcttaaaatcactt
ccgtctcgtattggcttaatgctggacatgacgttacgtgatattgaacgcgtactgtat
ttcgaatcatttgttgttatcgagcctggcatgaccacgcttgagcgcggccaaatgcta
accgaagaaacgtatctcgatgcgttagaagaatacggtgatgagtttgaagctaagatg
ggtgcagaagcagttcttgaattgctacgtgctatcaacttagaagaacagatcgagcaa
atgcgtgaagagttgccatcaattaactctgaaacccgtcgtaagaaggtcactaagcgc
cttaagctgatggaagcatttttcacttctggcaacaagccagagtggatgatcttaaaa
gtattaccggttcttccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacatcagatcttaacgatctttatcgtcgtgttattaaccgtaacaaccgcttaaag
cgtctgttagatttagctgcgcctgacattatcgtacgtaacgaaaagcgtatgttgcaa
gagtcagttgatgcgctattagataacggtcgtcgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattcaggccgttcggtaattaccgtaggacctact
ttacgtctgcatcagtgtggtcttcctaagaagatggcacttgagttattcaagccattc
atttacggcaagttagaaggtcgtggtttagcgactactattaaagctgctaagaaaatg
gttgaacgcgaacaggctgaagtatgggatgtgttagacgaagtgattcgtgaacatcca
gtaatgcttaaccgtgcaccaacacttcacagactaggtattcaagcatttgaacctgtt
ttgattgaaggtaaagcaattcaattgcacccgttagtttgtgcggcatataacgccgac
ttcgacggtgaccaaatggcggttcacgtaccattaacgcttgaagctcagttagaagct
cgtgcgctgatgatgtcaaccaacaacattttgtcaccagctaacggtgagcctgttatt
acaccgtctcaagacgttgtattaggtttgtattacactagccgtgaatgtattaatggt
ctcggtgaaggcatggctttctctgatgtatcagaagtagagaaagcatacgccacaggt
gttgctgaattacatgctcgcgttaaagtgcgtattactgagactcatatagctgaagat
ggcgaaagaacgaaagcaactcgtatcattgatactacagttggtcgtgctcttttatca
ttaattctgcctgaaggcttatcgtatgatttggttaaccaaaacatgggtaagaagcag
atttctaagttgttgaacacctgttaccgtcaactaggtcttaaagatactgttatcttt
gctgaccaattgatgtataccggtttccgttttgcaaccatttctggtgcctctgttggt
atcgatgacatggttattccagacgagaaatacaccttagttgcagaagctgaagctgaa
gtgcttgaaattcaagagcagttccaatcaggtcttgttactgccggtgagcgttacaac
aaagtcatcgatatttgggcaagtgctaacgaaaaagtctctaaggctatgatggaaaac
ctgtctactgagacagtgattaaccgtgatggtgtaccagagcaacaagcatcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgcagctcagatccgtcagtta
gcgggtatgcgtggtttgatggctaagcctgatggctcaatcatcgaaaccccaattaca
gcaaacttccgtgaaggtctaaacgtactacagtactttatttctactcacggtgcgcgt
aaaggtcttgccgataccgcattgaagacagctaactcgggttacttaactcgtcgttta
gtagacgttgcacaagacttagtcgttattgaagatgactgtggtgttgaacatggtcta
acaatgaaaccacttattgaaggtggagatgttgttgagccattacgtgaacgtgttcta
ggtcgtgttgttgctcttgacgttatgaagcctggtacaaatgaagtgcttgctccacgc
aacacacttcttgatgaagcctggtgtaatacgttagaagaccacagtattgatgaagtg
atagtacgttctgtaattacctgtgaaacagacttcggtgtgtgtgcagcgtgttacggt
cgtgacttggctcgtggtcatattatcaaccacggtgaagctattggtgttgttgcggcg
cagtcaattggtgaaccaggtacacagttaaccatgcgtacgttccacattggtggtgcg
gcatctcgagcttctgcagaaaacaacgttcaagttaagaacgcgggttctctgaagtta
cataatgctaagcatgtttcaaacatcgacggtaaacttgttatcgtatctcgttcttct
gaattagccgtcatcgatgagctaggtcgtgagaaagaacgttataaagtaccttacggt
actgtattagaggtattggaagattgtgacgttgcagctgggcaaattattgctaactgg
gatccacatactcacccaattatttctgaagttgcaggtagtgttaaattcgttgatatg
attgacggtgtcaccatgacacgtcaaacagatgaattaacaggtttatcttcagtcgtt
gtacttgaggttggtgcgcgtacttcagcaggtaaagaactacggcctgcaatacgctta
gttgatgctgatggtaatgacttaaagatccctggtacagaagtaccagctcaatatttc
ttacctggtcacgcgattgtgtcaaaagacgataacgcgaaaatcaacgttggtgacgca
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcaccggtggtcttccacgt
gttgctgacttatttgaagcgcgtaagccaaaagagcctgcaattcttgcagaaatctct
ggtactatctcgttcggtaaggaaactaaaggtaagcgtcgtctagtgatcactccagct
gatggcagtgaacactatgaagagatgatccctaagtggcgtaacttgaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgcagacggcccagaagcggctcatgacatt
cttcgtcttcgtggtatacacaacgtagcaaactacattgtgaacgaagtacaagatgtt
taccgtctacagggcgttaagatcaacgacaaacacatcgaagttatcattcgtcaaatg
ctacgtaagtgtttaatcacttcaacaggcgacactgatttcttagaaggtgagcaagca
gaagttgcacgcgtgaagattgctaaccgtgagttaatcgctcaaggtaagactcctgca
acgtttgagcgtgaattacttggtattaccaaagcatctttggctactgaatcattcatc
tcagcagcatcgttccaggaaaccactcgtgtgttaactgaagcggccgttggtggtaag
agcgatccattacgtggtcttaaagaaaacgtaatcgtaggtcgtttgatccctgctggt
acaggttatgcttatcacattgcccgtaacgaagaacgcgccaaagcggcaagttctcgt
ggcaaagtggcaacgacaactgtgactgcaagcgaagctgaacagaacctagcagatctc
ttaaacttggctggtagccaagattaa
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integrated database retrieval system
