Flagellimonas maritima: HME9304_00047
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Entry
HME9304_00047 CDS
T05505
Symbol
deaD
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spon
Flagellimonas maritima
Pathway
spon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HME9304_00047 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spon03019
]
HME9304_00047 (deaD)
03009 Ribosome biogenesis [BR:
spon03009
]
HME9304_00047 (deaD)
Enzymes [BR:
spon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HME9304_00047 (deaD)
Messenger RNA biogenesis [BR:
spon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HME9304_00047 (deaD)
Ribosome biogenesis [BR:
spon03009
]
Prokaryotic type
rRNA helicases
HME9304_00047 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
DUF3194
Motif
Other DBs
NCBI-ProteinID:
AWX43060
UniProt:
A0A2Z4LMV5
LinkDB
All DBs
Position
54652..56409
Genome browser
AA seq
585 aa
AA seq
DB search
MTKFEKLGLEKPLLDAISDLGFESPSEVQEKAIPILLEQETDLVALAQTGTGKTAAFGFP
MIQKIQSESRTTQGLILSPTRELCLQITNELKLYSKYVKGLNTVAIYGGASISDQARQIK
RGAQIIVATPGRMKDMIGRRMVDISKIDYCVLDEADEMLNMGFFEDIKDILSNTPQEKLT
WLFSATMPKEVSIIAKKFMNKPHEITIGTKNAGTSTVQHEYYVVGGRDRYPALKRLADAN
PGIFSVIFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQILVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKSIENK
IKQDFISKKIPTGIEICEIQLYHLANRIKETEVNPEIDNYLPAINDVLKDIDREELIKKI
ISVEFSRFYNYYSKTRDLNSSEGERERGNNKKSKGDIPPSNGSVRYFINVGERDGYDWMA
LKDFLRDTLNLEKEDIFNVDTKDTFSFFNTDAQVTEHVLKTFTEFKVEGRFINVEVSKNP
GGSGRGGRKRDKKRGHRKGGDNKSFKGGRKNNSGKRGGKKRSGFY
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtttgaaaaactagggttggaaaaacccttattggacgctatatccgattta
ggatttgaatccccatctgaagtacaggaaaaagccatcccaattttattggaacaagaa
accgacctcgttgcactagcacagacaggaacgggaaaaacagcagctttcggttttcca
atgattcagaaaatacaatctgaaagcagaactacgcaaggactgatactatcacccaca
cgtgaactgtgcttacagattaccaacgaactaaaattatattcaaaatacgttaagggt
ctcaataccgtagctatttatggtggcgcaagcatttctgatcaagcaagacagatcaaa
cgcggtgctcagatcattgttgctacgccaggacgaatgaaggatatgatcggacgtaga
atggtcgatatttcaaaaatcgattattgcgttcttgatgaagcggatgaaatgttgaac
atgggcttctttgaagacattaaagatattttatccaataccccgcaggaaaaattaaca
tggttgttttccgctaccatgcccaaagaggtatctatcatcgccaagaaattcatgaat
aagccccatgagattaccattgggactaaaaatgcaggaacttcaactgtgcaacacgag
tattatgtagttggtggacgtgatcgttatccagcactcaaacgtttggcagatgccaat
cccggtattttctccgtgatattctgtagaactaaaagagatacacaacgcgttgcggaa
aaacttatcgaagatggttataacgctggagcactacatggcgacctaagccagaaccaa
cgagatttggtcatgaactcattccgtaaaaaacaagtgcaaatactcgtagctacagat
gttgctgcccgtggtatcgatgtagatgatattacacatgttatcaattatcaactaccg
gatgaaatagaaacctacacacaccgaagcggtcgtacaggacgtgctggaaaatcaggg
atttcaatggtcattgtcactcgttccgagcttcgaaaaattaaatccattgaaaataag
attaagcaggactttatctccaaaaaaattccaacaggtattgaaatctgtgagattcaa
ctttaccatttagcaaatagaatcaaagaaactgaagtcaatcctgagatagacaattac
ttacctgcaataaatgatgttcttaaagacattgatcgagaagaattgatcaaaaaaatc
atttctgtagaatttagccgtttttataactattacagtaaaacaagggatttaaattca
tcggaaggtgaaagggagcgaggaaataataaaaaatccaaaggtgatattccaccaagt
aacggctcagtccgttattttatcaatgttggggaacgtgacggttatgattggatggct
ctcaaagattttttaagggatactttaaatctggaaaaagaagatattttcaatgttgat
accaaagatactttctccttttttaatacagatgcccaagttaccgaacatgtgcttaaa
accttcacggaatttaaggtcgaaggtcgctttatcaacgtagaagtctcaaaaaatcct
ggtggctccggtagaggtggcaggaaaagagataaaaaacgtggccatagaaaaggaggc
gataacaagtcatttaaaggtggcagaaaaaataattcaggtaagagaggcggaaaaaaa
cgttcagggttttattag
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