Flagellimonas maritima: HME9304_01186
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Entry
HME9304_01186 CDS
T05505
Symbol
cafA
Name
(GenBank) Ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
spon
Flagellimonas maritima
Brite
KEGG Orthology (KO) [BR:
spon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spon03019
]
HME9304_01186 (cafA)
03009 Ribosome biogenesis [BR:
spon03009
]
HME9304_01186 (cafA)
Messenger RNA biogenesis [BR:
spon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HME9304_01186 (cafA)
Ribosome biogenesis [BR:
spon03009
]
Prokaryotic type
rRNA processing factors
HME9304_01186 (cafA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
UBX
Motif
Other DBs
NCBI-ProteinID:
AWX44186
UniProt:
A0A2Z4LQU0
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All DBs
Position
1317088..1318635
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AA seq
515 aa
AA seq
DB search
MNRELIVRSSPDAVDFALLKDGKLIELHKDEDDNNFSVGDIFLAKIRKPVTGLNAAFVNV
GYEKDAFLHYHDLGPQLSSMLQFIKKVRTGKLKDFSLKNFPFEKDIDKNGSINEVIKANQ
SLLVQIVKEPISTKGPRISSELSLAGRYLVMVPFSDRVSVSQKIGSKEEKDRLIRLVKSI
KPKGFGVIIRTVAEGKKVAELDRDLQNLSSKWMTMCMKLQKASHPSKVLIELNRASSILR
DVFNDSFTGIHVDDETLYNQIKDYLHEIAPQKESIVKLYSGSSPIFEKFGIERQIKTSFG
RTASMSRGAYLVIEHTEALHVIDVNSGNRSNKAKNQEDTALEVNLSAASEIARQLRLRDM
GGIIVIDFIDMVKGDHRRKLFDHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEMNIK
TSEENPNGSGAEVEAPIVLIDKINHDLERIMKGNQKNNGVVLNIHPFIAAYLTKGFPSPR
YKWFVEYKKWVKIQPRDAYTYLEYRFKDKDGKTIR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgaatagagaattaatcgtaagatctagtcctgatgcagtcgattttgccttactaaaa
gatggaaaattaatagaattgcataaagatgaggatgacaacaacttttctgttggggat
atcttcctagccaagataagaaaacccgtcactggtttaaatgcggcattcgtaaacgta
ggttatgaaaaagatgcatttctgcattaccatgacctgggaccacaattgtcctccatg
ttacaattcattaaaaaagttaggacaggaaagctcaaggacttttcgctaaaaaatttt
ccatttgaaaaagatatagacaagaatggcagtattaacgaagttattaaggccaatcag
tcattattggtacaaattgtaaaagaacccatatcaaccaaaggaccaagaattagttca
gagctttcactagcgggacgttacttggtcatggtcccattttctgaccgtgtttccgta
tcacaaaaaatagggagcaaggaagaaaaagataggcttataagacttgtaaaaagtatt
aagccaaaaggatttggagttattatacgtaccgttgcagaaggcaaaaaagttgcagaa
ctggatagagatcttcagaacttgtcatccaaatggatgacaatgtgcatgaaattgcaa
aaagcatcccatccatccaaagttttgatagagctcaacagggcctcttccatactaaga
gatgtgttcaacgattcctttactggaatacatgttgacgatgaaacactttacaatcaa
atcaaagattatttgcatgaaattgcgccccaaaaagagtctattgtaaaattatattct
ggctcgtcccctatatttgaaaaatttggaattgagcgccagatcaagacctcttttggc
cgtacggcttccatgagtcgcggagcatatcttgtgatagaacatactgaagcacttcat
gtaattgatgtgaacagtggtaaccgttccaacaaggctaaaaatcaagaggatactgct
ttggaagttaatctttccgcagcatccgaaattgcaagacaacttagactgcgcgatatg
ggtggaattatcgttattgatttcatcgatatggtcaaaggtgatcacagaagaaaattg
tttgatcacttaagagacgaaatgaaggacgatagggcaaaacacaagattttgccacca
agtaaatttggtctggttcaaattaccagacaacgggttcgtccagaaatgaacatcaag
accagtgaggaaaatcccaatggttcaggtgccgaagtagaggctcctatcgtgttgata
gataaaatcaatcatgatttagagcgaattatgaaaggaaatcagaagaacaatggtgtt
gttctgaacatacatccctttatagcggcttatcttacaaaaggatttccatctccacgt
tataagtggtttgtggaatataagaaatgggttaagatccaacccagagatgcttatact
taccttgaatatcgttttaaggataaagacggtaaaaccataagataa
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