Sporosarcina sp. Te-1: J3U78_01040
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Entry
J3U78_01040 CDS
T08181
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U78_01040 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoo03019
]
J3U78_01040 (recQ)
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_01040 (recQ)
Enzymes [BR:
spoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3U78_01040 (recQ)
Messenger RNA biogenesis [BR:
spoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3U78_01040 (recQ)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J3U78_01040 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QTD43246
UniProt:
A0A975H1K7
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All DBs
Position
218461..220236
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AA seq
591 aa
AA seq
DB search
MERALSVLTTYFGYSSFRIGQEQVIRQVLDGEDTLCVMPTGGGKSICYQVPALVLEGTVL
VISPLISLMKDQVDALHQLGIPAAFINSTLSSEEYFGTMENALEGKYKLLYIAPERFDSP
SFIEQIGKMAISMIAIDEAHCISQWGHDFRPSYRMINRIIPFFDKKPVILALTATATPAV
REDICRQLEIGESNTVMTGFERSNLTFSVIKGQDREAYVKEYVRKNREEAGIIYAATRKA
VDQLHLALSKLGCQVAKYHAGLSDIERQKEQDRFLMDEAAVMVATNAFGMGIDKSNIRYV
IHYQMPKNMESYYQEAGRAGRDGLDSECTLLFSSQDVLTQRFLIDQSQDMNRIPAELEKL
QSMVDYCHTESCLQKFIISYFGETEATDCKRCANCTDTRERYDVTVDVQKVLSCVIRMGQ
RFGKTMIAQVLTGSRNKKVLEFNFQNLSTYGLMKDRNAKDVSDFIEFIISENYLGVENGQ
FPIIYVTELGKDVLTGKITVYRKGTVISKQITKENPLFNQLRALRMQLAQEAGVPPFVVF
SDKSLRDMAAKMPTTEEQFLEVNGVGTAKLERYGEAFINEIIAFQSQTVPN
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atcgaacgtgcgttatccgtattgacaacctatttcggctattcatctttccggattgga
caggagcaggtgatccgacaagtcctcgatggagaggatacactttgcgtcatgccgaca
gggggcggaaaatccatctgctatcaagtgcccgccctcgttctggaagggacggttctc
gtcatctctcctctcatttctctaatgaaagatcaagtcgatgcccttcatcaactcggc
atccctgccgccttcattaacagcacattgtcttcagaagaatatttcgggacgatggaa
aatgcgttggaaggcaaatacaaattgctttatattgcccctgaacgattcgactcgcct
tctttcattgagcaaatcggcaagatggccatttcgatgattgcgattgatgaagcacac
tgtatctcccaatgggggcatgatttcagaccgagttatcgaatgatcaaccggatcatc
ccgttcttcgataaaaagccggttattctggccttaacggcgaccgcaactccggccgtt
cgagaggacatttgcagacagcttgaaattggcgagagcaatactgtgatgacaggattt
gagcgaagtaatttgacgttttctgtcattaaaggccaagaccgggaggcgtatgtaaaa
gagtatgtccgcaagaatcgtgaggaggcgggcatcatttatgcggcgacgaggaaagcg
gtcgaccaattgcatttggccttatcgaaattaggatgtcaagtggcgaaatatcatgcg
ggtttatctgatatagagcgtcagaaggagcaagacagattccttatggatgaagctgct
gtcatggtagccacgaacgcgtttggaatggggatcgacaaatccaatatccgatatgtc
atccattatcagatgccgaaaaatatggaaagctattaccaggaggctggacgtgcgggg
cgggacggcctggatagcgaatgcacgctgcttttttcctctcaggatgttcttacacag
cgatttttgattgatcaatctcaggacatgaaccggattcccgctgaattggaaaaactg
caatcgatggtggattactgccatactgaatcatgtttgcagaaattcatcatatcctat
tttggggaaacagaagcgaccgactgcaaacgatgtgcgaattgtacagatactagggag
cgttatgacgtgactgtggacgtgcaaaaggtgctctcctgtgtaattcggatgggacag
cgttttggcaagactatgattgcccaagtgttgactggctctcgcaacaaaaaagtactc
gaattcaatttccagaacttatccacatatggtctgatgaaagatcgcaatgcgaaagat
gtctcggactttatcgagtttatcatttcagaaaactatctaggcgttgagaacggccaa
tttccgatcatctatgttacggaacttgggaaagacgttttgacagggaagattactgtg
taccgcaaagggacagtcatttcgaagcaaatcacgaaagagaatccgcttttcaaccaa
ctgcgggcgttgcgaatgcaattggcgcaagaagctggcgtgcctccattcgttgtcttt
tcggacaagtccttgcgggatatggccgctaaaatgccaacgacggaagagcaattcctc
gaagtgaatggtgtcggaacggctaagctggagcgatatggtgaagctttcatcaatgaa
atcatagcattccaatcccaaaccgtacccaactga
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