Sporosarcina sp. Te-1: J3U78_02095
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Entry
J3U78_02095 CDS
T08181
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J3U78_02095 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoo03021
]
J3U78_02095 (rpoD)
Transcription machinery [BR:
spoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J3U78_02095 (rpoD)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
MAM33
Exonuc_VII_L
DUF2408
DUF5830
Motif
Other DBs
NCBI-ProteinID:
QTD43267
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Position
439637..440827
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AA seq
396 aa
AA seq
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MMDKKERAGEMENDMTLDEVKASLLETGKKNGELTLEEVTDKLSVFEMEPDQFEEFLDQI
EAQGIEMDRKDDEEEEAVKPVADDEQFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLTGN
EEVKLAVAIQEGVEAEEKLASMDHPDPELQELVEKGENAKKKLAEANLRLVVSIAKRYVG
RGMLFLDLIQEGNMGLIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHM
VETINKLIRVQRQLLQDLGREPSPEEIGEEMDLSADKVREILKIAQEPVSLETPIGEEDD
SHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEV
GKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
ataatggataaaaaagagcgagctggagagatggaaaacgatatgacgttggatgaagtg
aaagcaagtttattggaaacaggcaagaagaatggtgaattgacgttagaggaagtaacg
gataaactgtccgtcttcgaaatggaaccggatcagtttgaggaatttcttgatcagatc
gaagcccagggcattgagatggaccggaaagacgatgaggaagaagaagcggtaaaaccg
gtcgcggacgatgaacagttcgacttaaacgatttaagcgtaccgcccggcgttaaaatc
aacgatcctgtccgcatgtatttgaaagagatcggtcgtgtcgatcttttgacaggcaac
gaagaggtcaaattagctgtcgccattcaggaaggtgtagaagcggaggaaaagctcgct
tcgatggaccatccggatccggaattgcaggagctggtagaaaaaggcgagaacgcgaaa
aagaaactggctgaagccaacttgcgacttgttgtcagtatagcaaaacgctatgtagga
cgcggcatgctgttcctcgatttgattcaggaaggcaatatgggtctgatcaaagcggta
gagaagttcgaccatacaaagggattcaaattcagtacgtatgccacttggtggattcgt
caggcaatcacacgcgcaattgccgatcaggcgcgtaccattcgtattccggtccacatg
gttgaaacgatcaataagttaattcgcgttcaacgtcaactgttgcaagacctgggacgt
gaaccatcaccggaggaaattggcgaagagatggatctgtccgccgacaaagtccgtgaa
atcttaaaaatcgctcaagaaccggtgtcgcttgaaacgccgattggggaagaagatgac
tcccacctcggtgatttcatcgaagattccgaagcccagtctccatcggatcacgcggct
tatgagctgttgaaggagcaattggaagatgttttggatacgctgaccgatagagaggag
aatgtcctccgcctccgcttcggattggatgatggtcggactcgtacattggaagaggtc
ggtaaagtctttggcgtgacacgggaacggatccgccaaattgaagcgaaagcattacgg
aagctgcgtcacccatctagaagtaaacgtctgaaagattttctagaataa
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