Sporosarcina sp. Te-1: J3U78_02135
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Entry
J3U78_02135 CDS
T08181
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoo03019
]
J3U78_02135
03009 Ribosome biogenesis [BR:
spoo03009
]
J3U78_02135
Enzymes [BR:
spoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J3U78_02135
Messenger RNA biogenesis [BR:
spoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J3U78_02135
Ribosome biogenesis [BR:
spoo03009
]
Prokaryotic type
rRNA helicases
J3U78_02135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_30
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTD41677
LinkDB
All DBs
Position
447221..448516
Genome browser
AA seq
431 aa
AA seq
DB search
MSKYTDYQFKPFLRDAIARLGFVQPTPIQKEMIPLILKGSNAIGQAHTGTGKSHSFLIPI
VERLEIDTDQLQAVITAPTRELATQLFTELNKLTEETEIRSALLIGGTDKQRTIGKLKSA
PHIIVGTPGRIRDMAENGALGIHTASILVIDEADLAFDMGFIEDIDRFAARMPADLEMYV
FSATIPEKLKPFLAKYMESPVHIQIGERKPLTEGMHYSLVPVRSMDRKKKLLQVLNSINP
YLAIVFTNTKQHADEIAEYLAGHGIKAGRIHGDLTPRERTRMMKQVRDLEFQYIVATDLA
ARGIDIPGVSHVINYELPDDLEFFIHRVGRTARAGLEGIAITLYEPSEDDKIVQIEKMGI
PFVHEDIKNGEWQEVKERHARKRRVKETDELDRKAASYVRKPDKVKPGYKKKMAREMESF
KKRERRLKRKK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagtatacagattatcaattcaaaccatttctacgggatgcgattgcccgtctc
ggttttgtgcaaccgacaccaattcaaaaagaaatgataccactcatcttaaaaggttcg
aatgctattggccaagcccatacagggacagggaaatcacatagcttccttataccgatc
gtcgagagattggagatagataccgatcaacttcaagccgtcatcacggcacctacacgg
gaacttgcaacccagttgttcacggagttgaacaagttgaccgaagagacagaaatacgg
agtgctttgctgatcggggggacggacaagcaaagaacgattggaaagttgaaatcggca
cctcatattatcgtaggtacgcctgggcggattcgagatatggcggagaacggagcactc
ggaatccacacagcttccatattggtaatcgatgaagccgatttggcgtttgatatggga
ttcattgaggatatcgaccggtttgcagctaggatgccagctgatttggaaatgtatgta
ttttcagctaccattccagaaaagttgaagccatttcttgcaaagtatatggaatcgccg
gtccatatccagatcggcgagcgaaaaccgttgaccgaaggaatgcattattcgctggtt
ccagttcgttcaatggacaggaagaaaaagctgctgcaagtattgaacagcattaatcca
tatttggccatcgtgtttaccaatacaaagcagcatgcggatgaaattgctgaatattta
gctggtcacggcatcaaggcagggcgtatacatggtgatttaacgccgcgtgaaagaact
cgcatgatgaaacaggtgcgggatctggaattccaatacattgtcgcgacggacttggca
gccagaggaattgatataccaggcgtcagccatgtcatcaactatgaattgccggatgac
ctggaattctttatccatcgggtaggaaggactgcgcgtgcagggttagaaggtatcgcc
attactttgtacgagccttcggaagacgataaaattgtccagatagaaaaaatgggcatt
ccatttgtccatgaagatatcaagaatggcgaatggcaggaagtgaaagagcgacatgct
agaaaaagacgtgtgaaagaaacggatgaactagatagaaaagctgcctcctatgtcaga
aagccagacaaagtgaaaccaggttataaaaagaaaatggcaagagagatggagagcttc
aaaaagagggaaaggagattgaaacgtaaaaaatga
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