Sporosarcina sp. Te-1: J3U78_03755
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Entry
J3U78_03755 CDS
T08181
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spoo03016
]
J3U78_03755
Enzymes [BR:
spoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J3U78_03755
Transfer RNA biogenesis [BR:
spoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J3U78_03755
Prokaryotic type
tRNA splicing ligases
J3U78_03755
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTD41967
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Position
738023..739174
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AA seq
383 aa
AA seq
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MFECRQWVGGVLCADGHYGYSQPVGGVVVYEGQLSPSGVGYDIACGNKAVRTDMKWSDIQ
KDVPKIMDAIASRISFGMGRKNADPVDHAVLEDPDWDVYKRIGQQEHDRLKKLAADQLGI
VGAGNHFVDLLIEEETGDVWIANHFGSRGFGHKTASGFLNLANGRRFSDKAPGESMEQAP
TLVDLETELGEMYYRAMTLAGKYAYAGRNTVMDQVLAILGATPLLEVHNHHNYAWKEIHD
GKERMVVRKGATPSAPGQMGFIGGSMGDISVIVRGKDNEANKDAFYSTVHGAGRIMSRTQ
AAGKMNWKTRKRVGGQISEIQMDEAVARFGVELRGGGTDESPFVYRKLQTVLDAHLETIE
IMHVLRPIGVCMAGANEFDPYKD
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaatgtcggcaatgggtcggtggagtgttgtgtgccgacggccattatggctat
agccagcccgtcggcggggttgttgtctatgaagggcagctttcgccttctggtgttggc
tatgatatcgcatgcggcaacaaagcggttcgcacggatatgaagtggagtgatattcaa
aaagatgtccccaagatcatggatgctatcgcttcccgcatttcatttggcatgggaagg
aagaatgctgatccagtcgaccatgcggtgctggaagatccggattgggatgtctacaag
cgcattggacagcaggagcatgaccggttgaagaagttggcggctgaccaacttggcata
gtaggggccgggaatcactttgtcgacctattgattgaagaggagacaggggatgtgtgg
atcgctaaccattttggcagtcgggggtttggccataaaacggcaagcggctttttaaat
ttggcgaatggcaggaggttttcagataaggctcctggagagagtatggagcaggcgcct
actttagtggatctggaaacggaacttggtgagatgtattatcgagccatgacgcttgct
ggaaaatacgcgtatgcaggcaggaacacggtcatggatcaagtgcttgctattttaggg
gcaacaccgttgttggaagttcataatcatcataattatgcctggaaggaaatccatgat
ggaaaagaacggatggttgtcagaaaaggggctactccgtcggccccagggcagatggga
ttcattgggggcagtatgggggatatttctgtcattgttcgagggaaagacaatgaagcg
aacaaggatgcgttttatagtacggtccacggtgcaggcagaatcatgagccggacacag
gcagctggtaaaatgaactggaagacgagaaaacgagtagggggacaaatttctgaaata
cagatggatgaagcggttgcccggttcggcgtcgagctgcgcggcgggggaacggatgag
agccctttcgtctatcgaaaattacagacggttctggatgctcacctggagaccattgaa
attatgcatgtgttgcggccgattggcgtctgcatggctggggcgaatgagtttgatcca
tataaagactaa
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