Sporosarcina sp. Te-1: J3U78_05535
Help
Entry
J3U78_05535 CDS
T08181
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U78_05535 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoo03019
]
J3U78_05535 (pnp)
03016 Transfer RNA biogenesis [BR:
spoo03016
]
J3U78_05535 (pnp)
Enzymes [BR:
spoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J3U78_05535 (pnp)
Messenger RNA biogenesis [BR:
spoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J3U78_05535 (pnp)
Transfer RNA biogenesis [BR:
spoo03016
]
Prokaryotic type
tRNA degradation factors
J3U78_05535 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_2
Toxin_trans
SCP2_Rv3818
Motif
Other DBs
NCBI-ProteinID:
QTD42281
LinkDB
All DBs
Position
complement(1080913..1083045)
Genome browser
AA seq
710 aa
AA seq
DB search
MTEQKKVYTLDWAGRPLTIETGQLAKQANGAVLVRYGDTTVLSTATASKNPKALDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAVLTSRLIDRPIRPLFADGFRNDVQVISLVMSV
DQNCSSEMAAMLGSSLALSISDIPFEGPIAGVHIGRIDGEFIVNPTPEQLEASELDLVVA
GTKDAINMVEAGAKEVSEDIILEAIMFGHEEIKKLIDFQEKIVAEVGKEKMEIELFELDE
QLLAVIKEKCEKDLVNAIQTEEKHAREDAINEVKARVIDEYTENEADEDTLKQVKNVLEK
LIKDEVRRLITDEKIRPDGRKLDEIRPLSSEVGILQRTHGSGLFTRGQTQALSVCTLGAL
GEVQIIDGLGLEESKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALEAVIPDEK
EFPYTIRLVAEVLESNGSSSQASICASTMAMMDAGIPIKAPVAGIAMGLVKKDDNYSILS
DIQGMEDHLGDMDFKVAGTDKGITALQMDIKIEGLSKQILEEALAQAKIGRNAILNHMLS
TISEPRGELSTYAPKIIMIRINPDKIRDVIGPGGKVINKIIEETHVKIDTEQDGTIYISS
PDSEMNEKAKKMIEDIVREAKVGEYYLGKVKRIEKFGAFLEIFPGKDGLLHISEIQEERT
KAVEDVLKLGDELLVKVIEIDNQGRVNLSRKVVLKEEKEREAAQNPTTES
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacagaaaaaggtatacaccctcgattgggcgggcagaccgttgacaatcgaa
accggccagctagcaaagcaggcgaatggtgccgtgctcgtaagatatggtgatacaact
gtactttcgacagcaaccgcatcgaaaaatccgaaagccctcgatttcttcccgttgact
gtcaattacgaagaacgtttatacgcggtcggcaaaatcccgggaggttttattaaacgg
gaaggtagaccatctgaaaaggccgtcttgacaagccgtcttattgaccgtccgatccgt
ccgctatttgcagatggattccgcaatgatgtacaagtcatttcccttgtcatgtcagtc
gatcagaattgttcttctgaaatggctgctatgctaggttcctcgctcgcattgtccatc
tcagacatcccgtttgagggcccgatcgcaggtgtccatatcggacgcatcgatggggaa
ttcatcgtcaacccgacaccagagcagttggaagcaagtgagctggatttagtggttgcc
gggacaaaagatgccatcaacatggtagaagccggagcaaaagaagtttccgaagatatc
attttggaagcgatcatgttcggccatgaagaaatcaagaagttgattgatttccaagaa
aagattgtagctgaagtcggcaaggaaaagatggaaattgaattgttcgagttggacgag
caattgttggcagttatcaaggagaaatgcgagaaagacttggtcaacgccatccaaaca
gaagaaaagcatgcacgtgaagatgccattaacgaagtgaaagctcgtgttattgatgaa
tatacggaaaatgaagcggatgaagacacactaaaacaagtgaaaaatgttttggaaaag
ctcatcaaggacgaagtacgccgtctcattacagacgaaaaaatccgtccggacggccgt
aagctggacgaaatccgaccattgtcttccgaagtcggcattcttcaaagaacgcatggc
tcggggctatttacgcgcggacagacgcaggcattgagtgtttgtacactgggtgcgctc
ggcgaagtacagatcattgacggtctcggactggaagaatccaagcgattcatgcatcat
tacaacttccctaacttcagtgtaggggaaacgggtccgatccgtgggcctggccgacgt
gaaatcggacatggagcactcggggaacgggcacttgaagcggtcattccggacgaaaag
gaatttccatatacaatccgtttggttgcggaagtccttgaatcgaatggctcctcttca
caggcatccatttgtgcatcgacaatggccatgatggatgcaggcatcccgattaaagca
ccggttgctggtattgccatgggattggtcaaaaaggatgacaactactcgatattgtcc
gacatccaagggatggaagaccatcttggagatatggactttaaagtggcaggaacagat
aaaggaattaccgccttgcagatggatattaaaatcgaaggcctttccaaacagattctg
gaagaagcattggcgcaagccaaaatcggccgtaatgcgattttgaaccatatgctatcg
accatttccgagccgcgcggagaactttcaacatatgcgccgaagattattatgatccgc
attaatccggataaaatccgggacgttatcggacctggcggaaaagtcatcaataaaatc
attgaagagacccacgtcaagatcgatacagaacaagatggaacaatttatatttcctct
cctgactcggaaatgaacgagaaagcgaagaaaatgatcgaagacatcgtcagagaagcg
aaagtgggagaatattacctaggcaaagtcaaacggattgaaaagttcggcgctttcctc
gaaatcttcccaggcaaagacggactgctgcatatctcggaaatccaagaagagagaacg
aaagcagtagaggacgttttgaagctcggcgatgaactgctcgtcaaagtaatcgaaatt
gacaaccaaggcagagtcaatttgtcacggaaagtcgtattaaaagaagaaaaagaacgg
gaagctgcacaaaatcctacaactgaatcttaa
DBGET
integrated database retrieval system
