Sporosarcina sp. Te-1: J3U78_05835
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Entry
J3U78_05835 CDS
T08181
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spoo03032
]
J3U78_05835 (topA)
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_05835 (topA)
Enzymes [BR:
spoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J3U78_05835 (topA)
DNA replication proteins [BR:
spoo03032
]
Prokaryotic type
DNA Topoisomerases
J3U78_05835 (topA)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J3U78_05835 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Peptidase_S64
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
QTD42337
UniProt:
A0A975CCQ3
LinkDB
All DBs
Position
complement(1138998..1141076)
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AA seq
692 aa
AA seq
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MADYLVIVESPAKAKTIERYLGKKYKVRASIGHLRDLPRSQMGVDTKNNYEPKYITVRGK
GPILQELKKDAKKAKKVFLAADPDREGEAIAWHLAHQLGIDIESDCRVVFNEITKDAIKE
SFKHPRPIDMNRVDAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRLIVDREN
EIKAFQPEEYWSIGGKFQKGGSTFEAAYYGNTEGKVKLSTKEQVDQALKTLNGDMFEVVN
VVKKERKRNPSPPFTTSSLQQEAARKLNFRARKTMMLAQQLYEGINVGKEGIVGLISYMR
TDSTRISETARTEAVSFVETMYGKDFVSVPGKPKGKESANTQDAHEAVRPTSVLRTPQSL
KEYLSRDQLRLYKLIWERFIASQMSPAILDTVTADLLNGDVKFRATGSEVKFPGFMKVYI
ESDEDQEEEKESILPPLDKGETVKSLSIDPKQHFTQPPPRYSEARLVKTLEELGIGRPST
YAPTLDTIQKRGYVTLDAKRFVPTELGEIVHQAVNQYFPDIIDIEFTAEMEKSLDDVEEG
EVPWKQVIDEFYRDFEKHVQVADEEMEKIEIKDEPAGEDCENCGSPMVFKMGRFGKFMAC
SNFPDCRNTKAIVKPIGVTCPSCKEGQVVERKSKTKRIFYGCDRYPDCEYVSWDKPIARP
CPKCQHTLVEKRLKKGIQIQCTECDYKENVQE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcggattatttagtgatagtggaatcccctgcaaaagcgaaaaccattgaacgctat
ttggggaaaaaatataaggtgcgtgcatcaatcggtcatttgcgggatcttccgcgaagc
caaatgggtgttgatacaaaaaataactatgaaccgaaatatattacggtccgtgggaaa
ggacctatattgcaagagttgaaaaaagatgcgaagaaagcgaaaaaagtctttctcgcg
gctgacccggatcgtgaaggggaggcaattgcttggcatctggcccatcaactcggcatc
gacatcgaatcggattgtcgtgtagtattcaacgaaataacgaaagatgccattaaggaa
tcttttaaacacccacggccgatagatatgaatcgggtggacgcacagcaggcgagacgg
atactggatcgtttggtcgggtacaatatcagcccgattctttggaagaaagtgaagaaa
ggcttgtcggcgggccgggtgcaatccgtggcacttcgtctgatcgttgaccgtgagaat
gaaataaaagcatttcagcctgaagagtactggtcaattggcggtaaatttcaaaaaggc
ggaagcacatttgaagcggcctattacggaaatacggaaggaaaagtgaaactgtcgacg
aaggaacaagtcgatcaagcgttgaagacattgaatggagatatgtttgaagttgtaaac
gttgtcaaaaaggaacggaaaagaaatccttccccgcctttcacgacttcttcactacag
caagaggctgcgagaaaattgaatttccgggctaggaaaacaatgatgcttgcccaacag
ctctatgaagggattaatgtcggcaaggaagggattgtcggtctgatcagttatatgcgt
accgattcgacccgcatttcagaaacagccagaactgaagcggtttcttttgtggagacc
atgtacggaaaggattttgtctctgtgccgggcaaaccaaaaggcaaagaatcagccaac
acccaagatgcccatgaggcggtaaggccaacatctgtcttgcgaacgcctcaatctttg
aaggaatatctttctagggaccagcttcggttgtataaactgatttgggagcgttttatt
gccagtcagatgtccccagcaattttggataccgttactgcggatttgttgaatggcgac
gtaaagttccgggcaactggatcggaagtcaaatttccaggttttatgaaggtgtatatt
gaaagcgacgaggaccaagaagaagaaaaggaatcgattcttccgcctttggataagggg
gaaacagtaaaaagcctgtccattgatccgaaacagcattttacccaaccccctccgcgc
tattctgaagcaagacttgtcaagacgttggaagaattaggaataggaagaccgtcgaca
tatgcgccaactcttgatacaattcaaaagcgaggctatgttaccttggatgcaaagcgt
tttgtcccgacagagttaggtgaaattgtccatcaagcggttaaccagtacttccccgat
attatcgatatcgaattcactgctgaaatggaaaagagccttgatgatgttgaagaaggc
gaggttccttggaaacaagtcattgacgaattctatagggattttgaaaaacatgtccaa
gtggctgatgaagagatggaaaaaatcgagatcaaggatgaacctgccggggaagactgt
gaaaattgcggctctccgatggtattcaagatgggccgtttcggaaaattcatggcttgc
tccaattttcctgattgcagaaatacaaaagcgattgtgaaaccgattggtgtcacttgt
ccttcttgtaaagaaggtcaagtggtagagaggaagagcaaaacaaaacgtattttctac
ggttgtgaccgttacccggactgcgaatatgtgtcatgggataaaccgattgcacggcca
tgcccaaaatgtcaacatacgctagttgaaaagagattgaaaaaaggtattcagatacaa
tgtacagaatgtgattacaaagaaaatgttcaagaatga
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