Sporosarcina sp. Te-1: J3U78_08575
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Entry
J3U78_08575 CDS
T08181
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J3U78_08575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spoo03019
]
J3U78_08575 (rnr)
03016 Transfer RNA biogenesis [BR:
spoo03016
]
J3U78_08575 (rnr)
Enzymes [BR:
spoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J3U78_08575 (rnr)
Messenger RNA biogenesis [BR:
spoo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J3U78_08575 (rnr)
Transfer RNA biogenesis [BR:
spoo03016
]
Prokaryotic type
tRNA degradation factors
J3U78_08575 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1CSD-TOTE-2
S1_RRP5
PF0610-like_N
TFIIE_beta
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QTD43367
LinkDB
All DBs
Position
complement(1667968..1670304)
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AA seq
778 aa
AA seq
DB search
MFDEQLRERLLEFMKEESYKPLTVQEIQESLGIEGAAEFKELVKMLVHLEQKGDIVRSRT
NRYGVPERMNLVRGKFIGHAKGFGFVTPETEGMDDIFIPPTEVNGAMNGDIVLVRIANSS
MGDRREGTIIRIAERKTTKVVGTYQDNRGFGFVIPDDKRLPMDIFIAKGHSLNAVEGHKV
VVEITEWPSELKSATGMVVQILGHKNDPGVDILSIIYKHGIEIEFPQEVMDEIKSTPETV
QEKDLFKRRDLRDEQIITIDGADAKDLDDAVSVVKNNDGTYVLSVHIADVSHYVRENTAL
DDEAYERGTSVYLTDRVIPMLPHKLSNGICSLNPGVDRLTLSCRMTIDGSGKITDHEIFE
SVIHSKERMTYTDVYKIIAEKDEELLKKYEHIVPMLNDMGDLAAILRQKRMSRGAIDFDF
KESKVLVNDEGWPTEIVLRERTVSEQLIEEFMLAANETVAEHFHWLNVPFIYRIHENPKE
EKLARFFEFLTNFGIVVKGTGNHVHPRALQEIIESIEGLPEETVISTMLLRSMQQAKYFE
ESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLIEKDLSSETIAHWNAALPEIAQHT
SDRERRAVDAERDTDALKKAQYMLDKIGEEFDGVISSITNFGMFVELENTVEGLVHVSYM
TDDYYRFDDRQMMMIGGHTGKQFRIGDEVTIRVVSVKPEESAIDFEIAGMKQSFHRTRKE
TPKVIHAKKQGGSEGGKRGEGKRSDKSSPGKKQGGPSQKKKFYEGVAKKTKKRPRKRK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atttttgatgagcaattaagagaacgtctcttggaattcatgaaagaggaatcgtataaa
ccgctcacggtccaggagatccaggaatcgctggggattgaaggggcggctgaattcaag
gaactggtcaagatgcttgtccatctcgagcagaagggcgacatcgtccgatcccggaca
aaccgatacggcgtgccagaacggatgaatctcgtacgcggcaagtttatcggtcacgcg
aaaggcttcggctttgtgacgccggagacggaagggatggatgatattttcattccgccg
acagaagtgaacggcgccatgaatggcgatatcgtgctcgtccgcattgcaaacagctca
atgggtgaccgccgggaaggaacgattatccgcatcgcggaacggaagacgacaaaagtc
gttggaacgtatcaggacaaccgcggcttcggcttcgtcataccagacgacaagcggctg
ccgatggacatttttatcgctaaaggccatagcctgaatgcggtggaaggccataaagtg
gtcgttgaaattaccgaatggccgagtgaactgaaatcggctacagggatggtcgtgcaa
atactcgggcataaaaacgatccgggtgtcgacattttatcgattatttataaacacggc
attgaaatcgaatttccgcaagaggtcatggatgagattaaatcgactccggaaactgtt
caggagaaagacttattcaaacgccgcgacttgcgcgacgaacagatcattacgattgac
ggcgcggatgccaaggacttggacgatgccgtttctgttgtgaaaaacaacgatggcacg
tatgtgctgtccgtccatatcgcagacgtcagccattatgtgcgagagaacacggcactg
gacgatgaagcgtatgagcgcggaacgagcgtctacttgaccgaccgggttattccgatg
ctgccgcataagctgtcgaacggcatctgttcgttgaatccgggtgtcgaccggcttacg
ctgtcgtgccggatgacgattgacggaagcgggaaaatcaccgaccacgaaatattcgag
agtgtgatccattcgaaagagcggatgacgtatacggatgtatataagatcattgcggag
aaggacgaagagctgcttaaaaagtatgagcatatcgtgccgatgctgaatgacatgggc
gacctcgctgcgattttgcgccagaagcggatgagccgtggagcgattgactttgatttc
aaggaatcgaaagtccttgtcaatgatgaaggctggccgacggagatcgtgttgcgcgaa
cggacggtttccgagcagctgatcgaggaattcatgctcgctgcaaacgaaacagtggcg
gagcatttccactggctgaatgtgccattcatttaccggatccacgaaaatccgaaagag
gaaaaactggcgcggttcttcgagttcctgaccaatttcggtattgtcgtgaaggggaca
ggaaaccacgtccacccgcgtgccttgcaggaaattatcgaatcgatcgaaggcctgccg
gaagagacggtcatttccacgatgttgctccgttcgatgcaacaggcgaaatacttcgag
gaaagtctcggccacttcggcttgtcgaccgatttctatacgcactttacatcaccgatc
cgccgttatccggatttaatcgtccaccggctgatccgcacgtacttgatcgagaaggac
ctgtcgtctgaaacgattgcccactggaacgctgcgctgccggaaatcgcccagcatacg
tccgacagggaacgtcgtgcagtcgatgcagaacgcgatacagacgcactgaagaaagca
cagtacatgctcgataagatcggtgaggaattcgacggcgtcatctcgtccattacgaat
ttcggcatgttcgtcgaactggaaaacacggtggaaggtctcgtccatgtgagttacatg
acagacgactactaccgattcgatgaccgccaaatgatgatgatcggcggccataccggc
aagcagttccgtatcggggacgaagtgacgatccgcgtcgtatccgtcaaaccggaagag
tccgcgatcgactttgaaatcgccggcatgaagcaatcattccaccggacgcgcaaagaa
acgccgaaagtgattcatgcgaaaaagcaaggaggatcggaaggcggcaaacgcggggaa
ggaaagcgaagcgacaagtcgtcaccaggcaagaaacagggcggaccgagccagaagaag
aaattctatgaaggcgtcgccaagaaaacaaagaaacgtccaagaaagagaaaatag
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