Sporosarcina sp. Te-1: J3U78_09915
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Entry
J3U78_09915 CDS
T08181
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spoo03009
]
J3U78_09915 (rlmD)
Enzymes [BR:
spoo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J3U78_09915 (rlmD)
Ribosome biogenesis [BR:
spoo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J3U78_09915 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_15
Cons_hypoth95
Methyltransf_11
Methyltransf_12
RrnaAD
TRM
N6_N4_Mtase
Methyltransf_32
TPMT
Methyltransf_23
N6_Mtase
PhosphMutase
Motif
Other DBs
NCBI-ProteinID:
QTD43025
UniProt:
A0A975CAV6
LinkDB
All DBs
Position
complement(1929785..1931155)
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AA seq
456 aa
AA seq
DB search
MSFIVNRNDRLTVTVEDLTHDGSGVAKVEGYPLFVPGALPGEEVEIKVGKTLKNYGFAEL
LEVKRQAPIRVEAPCHVFWECGGCQLQHLSYEAQLQQKQKQVRDVIDRIAKLPHVPVHPV
KGMEDPWRYRNKSQIPFSERNGHVVSGFFKPRTHHIVDTDVCIIQSEEADELMSTLKHEM
HALGLDAYDEKAHRGMLRHLIVRKGRATGELMVVLVTLKKKFPQKQAVVDLIKRVVQEVT
SIMQNVNPDKTNVIFGNETINLYGKPVIIDKIGDVQFEISARSFYQVNPVQTEVLYGQAL
EYAQLSGDETVIDAYCGIGTISLFLAQQAKEVYGVEIVPQAIEDAKRNAELNGITNAYFE
AGAAEDVIPRWYGEGKRFDVLVVDPPRKGCDEKLLTTILKYKPKRVVYVSCNPGTLARDL
RILEDGGYRTQEVQPVDMFPQSSHVEAIALIQRKIM
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttattgtaaatcgaaacgatcgcctcaccgtcactgtagaagatttgacgcat
gacggatcaggcgttgctaaagtagaaggatatccgctgttcgttcccggcgctttgcct
ggggaagaagtggaaatcaaagtcggtaaaacattgaaaaattatggatttgcggaactg
cttgaagtgaaacggcaggcaccgattcgggtggaagccccatgccatgtcttctgggaa
tgcggcggctgccaattgcagcatctttcgtacgaagcgcaactccagcaaaaacaaaag
caagtgcgcgatgtcatcgatcggatcgcgaaactgccacacgttccggtccatccggtg
aaagggatggaggatccatggcgctatcgcaataaatcccagattcccttcagtgaacgg
aacggccacgttgtatcaggtttctttaagccgcgtacgcatcatattgttgacacagat
gtttgtatcattcagagcgaggaagcggatgagctgatgtccacgctcaagcatgaaatg
catgcgcttggccttgacgcttatgatgagaaggcgcatcgtggcatgctgcgtcatttg
attgtgcgaaaagggcgggctaccggcgagcttatggttgtcctcgttacgttgaagaag
aagtttccacaaaagcaggcagtggtggatttgatcaaacgtgtcgtgcaggaagtgact
tccatcatgcaaaacgttaatccagacaagacaaacgtcatttttggaaatgaaacgatc
aacttgtacggtaagccagtcatcattgacaaaatcggggacgtccagtttgagatttct
gcgcgttctttttaccaagtgaaccccgttcaaacggaagtcctttatggacaggcactg
gaatacgcccaactatccggcgatgaaacggtgattgatgcctattgcggaattggaacg
atatctctcttccttgcacagcaagcgaaggaagtttacggcgtcgaaatcgttccacaa
gcaattgaagatgcgaaacgcaatgccgaattgaatggtattacaaatgcgtattttgag
gcaggcgcagcggaagatgtcattcctagatggtatggagaaggaaaacggttcgatgtt
ctggttgtagacccaccgcgtaaaggctgtgacgaaaaattactaactacgattttgaag
tacaagccgaagcgggtcgtctatgtgtcctgtaatccaggcacattggcacgcgattta
cggattttggaggatggcggctaccggacacaggaagtacagccggtggatatgttcccg
caaagtagtcatgtggaggctatagcgttgatacaacggaaaattatgtag
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