Sporosarcina sp. Te-1: J3U78_09975
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Entry
J3U78_09975 CDS
T08181
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03420
Nucleotide excision repair
spoo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J3U78_09975 (pcrA)
03430 Mismatch repair
J3U78_09975 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_09975 (pcrA)
Enzymes [BR:
spoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3U78_09975 (pcrA)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J3U78_09975 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
J3U78_09975 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
HHH_3
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QTD43037
LinkDB
All DBs
Position
complement(1943694..1945928)
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AA seq
744 aa
AA seq
DB search
MNRIAQNLLDGMNPEQARAVKKTEGPLLIMAGAGSGKTRVLTHRIAYLVVEKDVYPSNIL
AITFTNKAAREMRERIDGLLGAGSGERMWVSTFHSMCVRILRRDIDRIGISKSFSILDAS
DQLTVIKNVLKERNIDPKQYDPRSMLNAISSAKNECIDAETFKGQINSFNPYEKIVADVY
EGYSKKLRQNQSLDFDDLIMMTLKLFERVPEVLDYYQNKFQYIHVDEYQDTNNAQYRLVK
MLASKFRNLCVVGDSDQSIYRWRGADIGNILSFEKDYPDATVIMLEQNYRSTKRILKAAN
DVIQNNRSRYDKTLRTENNEGDSIYIYKANDEKDEAQFVVQTIIDLKEKENLSLDKFAIL
YRTNAQSRVIEEFLVKSNMEYTIVGGTKFYDRKEIKDLLAYLRLIANNDDDLALARIINE
PKRSIGATSFERMARFAIENDRSIFDAMQEVHFMGLTARAANEAVKFRELIAGFTQMQEY
LSVSELVEQVLDKTGYRAMLEREKTIEAESRLENIEEFLSVTEAFEKRAEEENGDRSLVA
FLTDLALIADIDSLDKAENQSGEKIVLMTMHAAKGLEFPVVFVIGMEENVFPHARSIADE
EEMEEERRLAYVAITRAEQKLYLTSAAYRTLFGRSSYNNPSRFLNEISETVTEVILNDSG
FTVGNAFARSSAPVRPAVKKPVYQTSGGEKMGWKAGDKAVHKKWGTGMVVSVRGTADDTE
LDIAFPDPVGIKRLLAKFAPIEKA
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaatcgctcaaaacctgctggacggcatgaatccggaacaagcgcgagccgtt
aaaaagacggaagggccactgcttatcatggcgggggcgggttctggaaaaacgcgtgtg
ctcactcatcggattgcgtaccttgtcgttgagaaggacgtctatccttccaacatactc
gcgattacgtttacgaataaagcggcgcgtgaaatgagagaacggatcgacggattgctc
ggtgcaggctcgggtgaacggatgtgggtctccacgttccactcgatgtgtgtccggatt
ttacgccgtgatattgaccggatcggcatctccaaatcgttttccatcctcgatgcctcc
gatcagctgactgtcattaagaatgtattaaaagaacggaatatcgatccgaaacaatat
gatccgcgttctatgttaaatgccatcagctctgcgaaaaatgaatgcattgatgccgaa
acctttaaaggacagatcaattcattcaatccgtacgagaagatagtggccgatgtctat
gaaggctactccaaaaaattgcgtcaaaatcagtcactcgattttgatgatctgattatg
atgaccctcaaattgtttgaaagagtcccggaagtcctcgactattatcagaacaaattc
caatatatccatgtcgatgaatatcaagatacgaacaatgcgcaataccggctcgtcaag
atgctggcgtccaaattccggaatctttgtgttgttggggattcggatcaatccatctat
agatggcggggggcggatatcgggaatattttgtcctttgaaaaggactatccagatgcg
accgtcatcatgctggaacaaaactacagatcaacgaaacgtattctgaaggctgcgaac
gacgttatccaaaataaccggagccgatatgataaaacgttgcggacggaaaataatgaa
ggcgattcaatttatatttataaagcgaatgatgaaaaggatgaggcgcaattcgtcgtc
cagaccatcattgatctgaaagagaaagagaatttatcgctggacaagttcgccatttta
taccggacgaatgcccagtcgcgtgtcatagaggaattcctcgtcaaatcaaatatggaa
tatactattgtcggcggcacgaagttctacgaccggaaagagattaaggatttgcttgcc
tacttacgattgattgctaacaacgatgatgatttggctttagcccggatcatcaacgag
ccaaaacgaagcatcggcgctacgtcgtttgaacggatggcgcgatttgcaatcgaaaac
gaccgctcgatttttgatgccatgcaggaggtccactttatgggcttaacggcgcgcgct
gctaatgaagcggtaaagtttagggaattgattgcaggtttcacgcaaatgcaggaatac
ttgtctgtatcggagcttgtggagcaggtgctggataagacaggctatcgagcgatgctc
gaaagggaaaagacaattgaagcggaaagccgtttggagaacatcgaggagtttctttcc
gtcaccgaggcgtttgaaaagcgtgccgaagaggaaaacggagatcgttctctcgtcgca
ttcctaacagacttggcgcttatcgcggatatcgattcgcttgataaagcagagaaccag
tccggcgaaaaaatcgtcctaatgacgatgcatgcagcgaaagggcttgaatttcctgtc
gtctttgtcatcggtatggaagagaatgtatttccgcatgcaagatcgattgcggatgaa
gaagaaatggaagaggagcgccgcctcgcttatgtggcgatcacgcgggctgaacagaag
ttatatttgacaagtgcagcgtaccggacattgtttggccgctccagttataacaatccg
tctcgtttcttgaatgaaatatctgagacggtgaccgaggttatcttaaatgattcggga
tttactgtcggaaatgcatttgcgcgttcttcagcccctgtacgacctgccgttaaaaag
ccggtgtatcaaacgagcggcggggagaaaatgggctggaaggccggagataaagccgtc
cataagaagtggggcaccggcatggtcgtcagtgtccgaggaactgcagatgacacggag
ctggatatcgcattcccggatccggtaggcatcaaaaggctgctagctaaattcgcgccg
atcgaaaaggcgtaa
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