Sporosarcina sp. Te-1: J3U78_11110
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Entry
J3U78_11110 CDS
T08181
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spoo03009
]
J3U78_11110 (rlmD)
Enzymes [BR:
spoo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J3U78_11110 (rlmD)
Ribosome biogenesis [BR:
spoo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J3U78_11110 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
Methyltransf_23
Cons_hypoth95
PrmA
Motif
Other DBs
NCBI-ProteinID:
QTD39427
UniProt:
A0A975C7I7
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All DBs
Position
complement(2164124..2165518)
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AA seq
464 aa
AA seq
DB search
MTVTIGETLVANVHRLDTKGNGQAVIWRESEKGSNPKKLKLTIPQTLPGETVQVVVDQPE
KRRRKALPEEILNAHPERVEAPCPHFELCGGCVWQHWSYEGQLKHKTSHVKEALESVGLD
PSLVQDTIGMENPWHYRNKMEFTFSPEGDLGLHEQGNFRKIIPLETCLIAGRNMVDATME
VSEWVKEHQLSGYNKDTHQGLLRHLMVRESFATGEVMLAVFATEAPAGDLANTAEDLINR
ITAKFPNVKSLLWLVNTDWADRTQSEETFVLAGRDYIYDELGGYRYRLWFDTFFQTNPVQ
AQKLVDLALEMGKPQDDEKMIDLFCGVGTFSLPFAARVKELAGIEIVETSIESAKRNALD
NDLHNTTFLARDARRGIDEVHESWGLADLLLIDPPRCGAGGKVMRRIGRAQPKRIVYVSC
NPDTFATDVAELLPFGYTLETVQPVDLFPHTVHVECCSLLVRKD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttacaattggagaaacattggtcgcaaatgtccatcgtttggatacaaaaggg
aatgggcaggcagttatttggcgggagagcgagaagggcagcaatccgaaaaagctcaag
ctgaccattccgcagacgctgccgggagaaacggtgcaagtagttgtggatcagccggaa
aaaaggagacggaaggcgttgccggaggagattctgaacgcacatcccgagcgggtggag
gcgccttgtccgcacttcgagctttgcgggggctgcgtttggcagcactggtcgtatgaa
ggccagcttaaacataagacaagtcatgtgaaagaggcgctggagagtgtcggattggat
ccgtctctcgttcaggacacgatcgggatggagaatccatggcattaccgcaataaaatg
gagttcaccttttcaccggaaggggatcttggcctccatgagcaagggaattttcgcaaa
atcattccgctcgagacatgcttgatcgctggacggaacatggtggatgccacgatggaa
gtaagcgagtgggtgaaagagcatcagctgagcggatacaataaagatacacatcagggg
ctccttcgccatctaatggtccgtgaatcattcgcaacaggcgaggtcatgttggcggta
tttgcgacggaagcgccggctggtgatttggcgaatacagcggaagatttgattaacaga
atcacagcaaagtttccgaacgtgaaaagtcttctttggcttgtgaacacggattgggcg
gaccgcacgcaatcggaagaaaccttcgtgcttgcgggacgcgactacatttacgacgaa
ctgggcggctatcgttaccgtctctggttcgatacattcttccagacgaaccccgttcaa
gcacaaaagctggtagatctggcgctcgaaatgggcaagccgcaggatgatgaaaagatg
atcgatctgttttgcggcgtcggcaccttctccttgccatttgccgcacgcgtcaaggaa
ctggcgggcattgaaattgtcgagacatcaatcgaatccgcaaaacggaatgcgctcgat
aacgatttgcataacacgacattcctcgctcgcgacgctcgccggggcattgacgaagtg
catgaaagctggggccttgcggatctgttgctcatcgacccgccgcgttgcggagcgggc
ggcaaagtgatgcgccggatcggacgtgcccagccgaaacgaattgtctacgtatcatgc
aacccggatacattcgcgactgacgttgcagaattgttgccgtttgggtatacgctagag
accgtgcagccggtggatctgtttccgcatacggtacatgttgaatgttgctcactgttg
gtcaggaaagactaa
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