Sporosarcina sp. Te-1: J3U78_13540
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Entry
J3U78_13540 CDS
T08181
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3U78_13540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoo03021
]
J3U78_13540 (rpoC)
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_13540 (rpoC)
Enzymes [BR:
spoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3U78_13540 (rpoC)
Transcription machinery [BR:
spoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3U78_13540 (rpoC)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3U78_13540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QTD39852
UniProt:
A0A975C5L1
LinkDB
All DBs
Position
complement(2614921..2618523)
Genome browser
AA seq
1200 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
TPRALEEVIYFASYVVIDPADTPLERKQLLSEKEYRLYREKYGNKFQALMGAEAIEQLLK
AIDLDKETEMLKEELKTVQGQRRTRAIRRLEVVESFRNSGNRPEWMVLEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPMLVEGRAIQLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGAAGEGTVFSNVNEALIAYQTGHVHLHTRIAVY
AGSLNNPTFTEEQNQKLLLTTVGKLIFNEILPETFPYINEPTSNNLEVETPDKYFIEGTV
NVKEYLQNVDLVEPFIKKFLGNIIAEIFKKFHITETSKMLDRMKNLGFKYSTRAGITVGI
ADIVVLPNKDEILQEAQSKVDKVTQQFRRGLITEEERYDRVISYWSHAKDEIQDKLMDSL
ENTNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEITALTEGAEIIETLE
ERIEGRHAKKTIRHPETGEVLVEKDGLITADLSRKVIEAGIEKVTIRSAFTCNTKHGVCK
KCYGINLATGETVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITSGLPRIQEIF
EARNPKGQAVISEIKGEVAEIDEIREGQKEVTIQGEVETRKYLAPYNARLKVQVGDTIDR
GENITDGSIDPKELIVVKDVATVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IEAGDTDLLPGSLLDIHQFSEANAVVLKKGRVPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKTDELLGLKENVIIGKLVPAGTGMQRYRHIEMEQDKEADSANAVSVE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaagattggtctggcttcaccggataagatt
cgttcttggtcatatggtgaagtgaaaaaacctgaaacaatcaactaccgtacgttgaag
cccgagaaagacggtttattctgcgagcgtatcttcggaccgacaaaagactgggaatgt
cattgcggtaagtataagcgggtacgttacaaaggtgttgtatgtgaccgttgcggcgtc
gaggtaactcgacaaaaagtccgtcgcgaacgcatgggccatatcgaattggctgcacct
gtcacgcacatttggtatttcaaagggatcccgagccgtatgggcctcattttagatatg
acacctcgtgcattggaagaggtcatctactttgcatcttatgttgtcattgatccagcc
gatactccgctagagcggaaacaactgctttctgaaaaggaatatcgcttataccgtgag
aagtacggcaataagttccaagccttgatgggcgcagaagcgattgaacagctattgaaa
gcgatcgatctcgacaaggaaacagaaatgctgaaagaggaattgaaaacagttcagggt
caacgtcgtacacgtgcgatccgtcgtctcgaagtcgttgaatcattccgtaattcaggc
aaccgtccggagtggatggtccttgaagtgcttccggtcatcccgccggaattgcgtccg
atggtccaattggacggcggccgttttgctacatcggatctaaacgacctgtatcggaga
gtcatcaaccgtaacaaccgtttaaagcgcttgcttgatcttggtgcacctggcatcatc
gttcaaaacgagaagcgtatgttgcaggaagcggtcgacgcattggttgacaacggacgt
cgaggacgccctgtcaccggaccgggaaatcgtcctttgaagtctttgtcgcatatgcta
aaagggaaacaaggccgtttccgtcaaaacttgctcgggaagcgggttgactattcaggc
cgttccgttattgttgtcggaccgaacttgaaaatgtatcagtgtggactgcctaaggaa
atggcgattgagctgttcaagcctttcgttatgaaagagcttgtcgaacgtggtcttgcg
cacaacatcaagagcgctaaacggaagatcgagcgtctgcattccgaagtatgggatgtt
cttgaagacgtcatcaaggaacaccctgttctattgaaccgggcccctactcttcacaga
ctcggaattcaagcgttcgaaccgatgcttgttgaaggtcgtgccatccaattgcacccg
ctcgtatgtacagcatataacgctgactttgacggggaccaaatggctgttcacgtacct
ttgtctgctgaggctcaggctgaggcacgcttgctgatgcttgcagcgcagaatatcttg
aacccgaaagatggtaaaccggttgttacgccttctcaggacatggtattagggaactat
tacctaacgttggaacgtaaaggtgctgccggtgaaggaactgtcttcagcaatgtgaat
gaagcgttgatcgcataccagactggccatgttcatcttcatacaagaattgcggtatat
gcgggttccttaaacaatccgacattcactgaagagcagaatcaaaagctgttattgacg
accgtcgggaaattgattttcaatgaaattctgccggaaacgttcccatacatcaatgag
ccaacgagcaataacttggaagttgaaacgccggataagtatttcattgaaggaactgtc
aatgtcaaagaatatcttcaaaatgttgacttggttgaaccgttcattaaaaagttcctt
ggtaacatcattgcggaaatctttaagaagttccatattacggagacttccaaaatgctg
gaccgcatgaaaaacctaggtttcaaatattcgacacgtgcaggaatcaccgttggaatc
gccgatatcgttgtcttgccgaacaaggatgaaatcctgcaggaagcccaaagcaaagtg
gataaagtgacgcagcaattccgtcgaggtctcattacggaagaagagcgttatgaccgc
gtcatttcttattggagccatgcgaaggatgaaatccaagacaagttgatggactcactg
gaaaatacgaatccgatttacatgatgagtgattccggagcccggggtaatgcctccaac
tttactcagcttgcagggatgcgtggtttgatggcgaacccggctggtcgtatcatcgaa
cttccgatcaagtcatcattccgtgaaggtcttacggttctcgagtactttatctcgacg
cacggggcgcgtaaaggtcttgccgatacggcattgaagacagctgactccggttacttg
acccgccgtctcgtagacgtggcgcaagatgttatcgtccgtgaagatgattgcggtaca
gatagaggtcttgagattactgcactaaccgaaggggcagaaattatcgaaacgttggaa
gagcgtatcgaaggccgtcatgcgaagaaaacaatccgtcatccggaaactggtgaggtg
cttgtggagaaagacggcttgattacagctgacttgtctcgaaaagtaatcgaggcaggc
atcgagaaagtgacaatccgttcagcattcacatgtaatacgaaacatggcgtatgtaaa
aaatgttacggcatcaacttggctacaggtgaaacggttgaggtcggcgaagcagtcgga
attatcgctgcgcaatcgatcggagagccgggaacacagcttacgatgcgtacattccat
acaggcggtgtcgcaggagacgatatcacatcaggtcttccgcgtatccaagaaattttc
gaggcaagaaatccgaaagggcaagccgtcatttctgaaatcaaaggtgaagtggcggaa
atcgatgaaatccgggaagggcagaaagaagtcacaatccaaggtgaagtcgaaacgaga
aagtacttggctccttacaatgcacgtctgaaagtgcaagtcggagatacaatcgaccgt
ggtgaaaacattacggatggttctatcgatccaaaagaattgattgtcgtaaaagacgtg
gcaacagtccaggaatacttgctgaaagaagttcaaaaagtataccgtatgcaaggtgtt
gaaattggagataaacacgttgaagtcatggttcgccaaatgcttcgcaaagtacgtgtc
attgaagcgggcgacactgacttgttgccaggatcgttgttggatatccatcaattctcg
gaggcgaatgccgttgtcctgaaaaaaggaagagtgccggcaacgtcccgaccagttatt
cttggtattacaaaagcgtcgcttgaaacggaatcattcctatccgccgcttcgttccaa
gaaacaacacgtgttcttaccgatgcagccatcaaaggtaaaaccgatgagttgctcggc
ttgaaagagaatgttatcatcggtaaacttgtgcctgcgggaacaggtatgcagcgttat
cgtcatattgagatggaacaggacaaagaagcggattcggctaacgcagtatcagtcgaa
taa
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