Sporosarcina sp. Te-1: J3U78_13545
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Entry
J3U78_13545 CDS
T08181
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3U78_13545 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoo03021
]
J3U78_13545 (rpoB)
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_13545 (rpoB)
Enzymes [BR:
spoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3U78_13545 (rpoB)
Transcription machinery [BR:
spoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3U78_13545 (rpoB)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3U78_13545 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QTD39853
LinkDB
All DBs
Position
complement(2618636..2622178)
Genome browser
AA seq
1180 aa
AA seq
DB search
MKELTGHLVQYGQHRQRRSFARINEVLELPNLIEIQTASYEWFLEEGLREMFHDISPIQD
FTGNLSLEFVDYQLGEPKYPVDESKERDVTYAAPLRVKVRLHNKETEEVKEQDVFMGDFP
LMTENGTFIINGAERVIVSQLVRSPSVYYNDKTDKNGKRGFSATVIPNRGAWLEYETDAK
DVVHVRIDRTRKLPITVLLRALGFSTDQEIIELLGDNEYLRNTLEKDNTENSEKALLEIY
ERLRPGEPPTLDSAKSLLYSRFFDAKRYDLANVGRYKMNKKLHLQNRLFNQVVAETLVDP
ETGEILLEKDQLIDRRTLDRLLPHLEKGIGIQELSHVGGVLEDDITIQTIKIYAPKSEDK
QVINVISNANIDESVKHVTPADIVASISYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQN
QFRIGLSRMERVVKERMSINDTQSIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLA
ELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTFARVN
KFGFIETPYRKVDPETNRVTEQIDYLTADIEDNYVVAQANAPLNEDGSFVNEEVIGRFQG
DNTVFKREQIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFV
GTGMEHVSARDSGAAVLAKYDGIVEHVEAKEVRIRRIETIDGKEVKGDLTVYRLENFIRS
NQGTCYNQRPIVSVGDRVKPRDIIADGPSMDKGELALGRNVLVGFMTWDGYNYEDAIIMS
ERLVKDDVFTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRVGAEVRD
GDILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDG
DELPPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPESDMPFLPDGTPIDVMLN
PLGVPSRMNIGQVLELHLGMAARNLGIHMASPVFDGANEEDVWDTMEESGMNRDGKTVLY
DGRSGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGQSVPQPGVPESFKVLIKELQSL
GLDVKMLTDDFEEIEMRDLDEDDDMQPTDALNLMTEDQPV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagttgacaggtcatttagttcagtatggtcaacaccgtcagcgcagaagtttc
gcgcgaatcaatgaggtcctcgagttgccgaatttgattgaaatccagacggcatcttac
gagtggttcttggaagaaggattacgtgagatgttccacgatatttccccaattcaagat
ttcacagggaacctttcgttggaattcgtcgattatcaactcggggagcccaaatacccg
gtcgatgaatctaaagaacgtgacgtaacgtatgcagcaccgctccgcgtcaaagtgcgc
ctgcacaacaaagaaacagaagaggtgaaagaacaggacgttttcatgggtgatttcccg
cttatgactgaaaacggaacgttcatcatcaatggtgcggaacgggttatcgtttcccaa
ttagtccgttctccgagcgtttattataatgacaagacggataagaacggaaaacgcggt
ttttccgcaacggtcattccgaatcgtggagcttggcttgaatacgaaacggatgccaaa
gatgttgtgcatgtacgcatcgaccggacccggaaacttccgatcacagtacttttgcgt
gcgcttggtttctctactgaccaagaaatcattgaattgcttggagacaatgagtatctt
cgtaacacactagagaaagacaacaccgaaaactcggaaaaagcgcttctagaaatttat
gagcgtctccgtccgggcgaaccgcctacattagatagtgccaagagtcttctatattca
cgtttctttgatgcgaagcgatatgaccttgctaatgtgggtcgttacaaaatgaacaaa
aaactccacttgcaaaatcgcctattcaaccaggttgttgctgaaacactagttgacccg
gaaactggcgaaatcttgttggagaaagatcaactcatcgaccgcaggacattggatcgc
cttctgccgcacttagagaaagggatcggcattcaggaactctcgcatgtcggtggtgtc
ctggaagatgatatcactatccaaacaattaaaatatatgcgccgaagagtgaagacaag
caagtgatcaacgtcatctcgaatgccaatattgatgagtctgtaaagcatgtcacacca
gctgacattgttgcttctatcagctacttcttcaatttattgcatggcgtcggtaataca
gatgatatcgaccatcttggaaatcgccgtctccgttcggttggcgaattgcttcaaaat
cagttccgcatcggtctttccagaatggaacgggtagttaaggaacggatgtcgatcaat
gatacgcaatcgatcgtaccgcaacagttgatcaatatccgacctgtcattgcatctatt
aaagagttcttcggaagctcgcaattgtcccaattcatggatcaaacaaacccgcttgct
gagctgacacataagcgtaggctatctgccctcgggcctggtggtcttacaagggagcgc
gccggaatggaagtccgtgacgttcactattcccactatggccggatgtgtccgatcgaa
acgccggaaggtccgaacatcggattgatcaactcgctgtcaacatttgcgcgtgtaaat
aaattcggcttcatcgaaacgccttatcgtaaagtagatccagagacgaaccgtgtcacg
gaacagattgattatctgacagctgatatcgaggataattatgtcgttgcacaagcgaat
gcccctctaaacgaagacggttcatttgtaaacgaggaagtcatcggtcgtttccaaggg
gataacacggtcttcaaacgtgaacagatcgattacatggatgtttcaccgaagcaggtt
gtttctgctgcgacggcatgtattccattccttgaaaacgatgactcgaaccgtgccctc
atgggtgcgaacatgcaacggcaggctgtacctctccttaatccggaagccccgtttgtc
gggactggaatggagcatgtatcagcccgggattccggtgcagcggttcttgcgaaatac
gacggcattgtagagcatgtagaagcgaaagaagtacgtatacgacgcatcgagacgata
gatggtaaagaagtaaagggtgaccttactgtgtaccgtcttgagaatttcattcgttcg
aaccaagggacttgctataaccaacgtccgatcgtgtctgttggcgatcgtgtgaaacca
cgcgatatcattgctgatggtccttccatggataaaggtgaattggcacttggacgaaac
gtactggtcgggttcatgacatgggatggctataactatgaggatgccatcatcatgagc
gaacgtcttgtgaaagacgacgtatttacatccatccatattgaggagtacgaatcagaa
gccagagataccaaactcggacctgaagagattacacgggatattccgaatgtcggtgaa
gatgcgctccgcaacctggatgatcgtggtattatccgcgtgggtgcagaagtgcgggat
ggcgatatcctagtcggaaaagtgacaccaaaaggggttacagaactgactgccgaggaa
cgcttgctccatgctattttcggtgaaaaagcccgggaagtccgggatacttcattacga
gtcccgcacggtgctggcggtatcgttctcgatgtaaaagtgttcaaccgtgaagatggc
gacgaattgccaccgggcgttaatcagctcgttcgcgcgtatatcgttcaaaaacggaag
atctctgtcggggacaagatggcaggacgtcacggtaacaaaggggttatctcccgaatt
ttacctgagtctgatatgccattcttgccggatggcacaccgatcgatgtcatgttgaac
ccgctcggcgtaccatctcgtatgaatatcggtcaagttttggaattgcatcttggaatg
gctgcacgtaatcttggtattcacatggcttctcctgtatttgacggagccaatgaagaa
gatgtttgggatacgatggaagagtcaggcatgaaccgggatgggaagacggtcttgtat
gatgggcgctcaggtgaaccatttgacaaccgggtctctgtcggagttatgtatatgatt
aagttggcgcacatggtcgacgataaacttcatgcccgttccactggaccatactcactc
gttactcagcagccgctcggcggtaaagcccaattcggcggacagcgtttcggggagatg
gaagtatgggcactagaagcatatggtgccgcctatacattgcaagagattcttacagtg
aagtccgatgacgtcgtgggtcgtgtgaaaacatacgaagcgattgtcaaagggcaaagc
gtgccgcagccaggcgttccagagtcattcaaagtattgatcaaggaactgcaaagcctt
ggcttggacgttaaaatgctgacagacgatttcgaggagatcgaaatgcgtgacctggat
gaggatgacgatatgcagcctacggatgcattgaatctcatgacggaagatcagcctgtt
tga
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