Sporosarcina sp. Te-1: J3U78_18585
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Entry
J3U78_18585 CDS
T08181
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3U78_18585 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spoo03021
]
J3U78_18585 (rpoE)
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_18585 (rpoE)
Transcription machinery [BR:
spoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3U78_18585 (rpoE)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3U78_18585 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
WHD_Rok
DUF4224
BUD22
Motif
Other DBs
NCBI-ProteinID:
QTD40738
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All DBs
Position
3584882..3585469
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AA seq
195 aa
AA seq
DB search
MNLKEMTKEELAEESLIDIAFAILTERREPLTLQQLMDEIRELTGITEAQMQDKLLQFYT
DMNIDGRFLAIHDNRWGLREWYPVDQIEEETAPVVKVRKKKKKKAYDDEDEEEEDLVEEE
EDELFDEEYDELDDEEDDDDLDEEEDEEDIIEIEEDLIDTDDELEIIPDEELDIDEEELD
EEDEEEEELEEDEDL
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
ttgaatctcaaagaaatgacaaaagaagaactagctgaagaatcattgattgacattgcg
tttgccattttaacagaacgacgcgaaccattgacacttcagcagttaatggatgaaatc
cgcgaattgacgggtataactgaagctcaaatgcaagacaagctcctgcaattttatacg
gacatgaatatcgacggtagattccttgccatccatgataaccgatggggcctccgtgaa
tggtatccggtcgatcaaatcgaagaagaaactgcaccagtcgtcaaagtacgcaagaag
aaaaagaagaaagcatacgatgatgaggacgaggaagaagaagacctcgtggaagaagaa
gaagatgaattgttcgatgaagaatatgatgaacttgacgatgaagaagatgatgacgac
ttggatgaggaagaagacgaggaagacatcattgagatcgaagaggatctaatcgatacg
gacgatgagttggaaatcattccggacgaggaactcgacattgacgaggaagaactcgat
gaggaagacgaagaagaggaagaattagaagaggacgaagacctctaa
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