Sporosarcina sp. Te-1: J3U78_20275
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Entry
J3U78_20275 CDS
T08181
Name
(GenBank) tetratricopeptide repeat protein
KO
K20480
HTH-type transcriptional regulator, quorum sensing regulator NprR
Organism
spoo
Sporosarcina sp. Te-1
Pathway
spoo02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
J3U78_20275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spoo03000
]
J3U78_20275
Transcription factors [BR:
spoo03000
]
Prokaryotic type
Helix-turn-helix
Other families
J3U78_20275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
HTH_3
SHNi-TPR
TPR_7
HTH_31
TPR_10
TPR_11
SUCH1_C
SNAP
CFAP70_mid_TPR
ARM_TT21_C
MIT
CFAP70_TPR_C
TPR-S
Chorismate_bind_2
CATSPERB_1st
RMD1-3
Motif
Other DBs
NCBI-ProteinID:
QTD41035
LinkDB
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Position
complement(3976259..3977557)
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AA seq
432 aa
AA seq
DB search
MRIGHVIRAERVRQEMKQVVLAKGICTPSYLSKIERNLIEPSEEIVELLMERLGLDSAKF
LQPAQDKTEQEFSQMLKDSYRNVITKRDKDYTRQQLELLLQENPIFEDQSIYYTHSLIII
RFRLIAGDDLDDIGKELDNMANFSEYFGSMQTYLFTLNKALFYYTKSHFKKALEHFEQVI
FQSENIYLEDWEKAELFYMLGVAYTADVRIFHSIEYIRRALAYFRENFQMKRVLDCYILL
GITYKKSEQYQEAYEAYTKALQLCDEFNLDNEKGLIYHNIGTLCAIKGKSEEAIENYIKS
LELKESHDSPLITIYCLIIEYSKMNDKKLVDEWTSKGLSLYQELNDETLDSYFHHYRFYR
SLHQKGGLSVSVAKETIQYFKDIQDFRHVHKYCTALAEWYYSNRKYKLSSIYFREANRYS
YIYKKIDNWEDL
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaggataggacatgtgatccgggcagagcgcgtccggcaagaaatgaaacaagtcgtt
ctggcaaaagggatctgtacgccttcctacttatcaaaaatcgaacgaaacctgattgaa
cccagtgaagaaatagtcgaactgctcatggaacggctcggactggattcagccaaattt
ttgcagcctgcccaagacaaaaccgaacaggaattttcacaaatgctcaaagacagctat
cggaacgtcatcaccaagcgggacaaagactacactcgtcaacaacttgaactgctcctt
caggaaaacccgatttttgaagatcaatcgatttattatactcattcactaataatcatc
cgatttcggcttattgctggtgatgatttggacgatatcggaaaagaattagataatatg
gctaactttagtgagtatttcggtagcatgcaaacttatttattcaccttaaacaaagcc
ttgttttattacactaaaagtcattttaagaaagctttggagcattttgaacaagttatt
tttcaatcggaaaatatatatttagaagactgggagaaagctgaacttttttatatgctc
ggggtggcctatacagcggatgtacgtatatttcattctattgaatatatcagaagagct
ttagcttattttagagaaaattttcaaatgaaaagagtgcttgactgttatattcttcta
ggtataacttataaaaaaagtgagcaataccaagaagcatacgaagcttatactaaggca
ttacaactttgtgatgaatttaatttagataatgaaaaagggcttatctatcacaacata
ggaactttatgcgcaattaaggggaaaagtgaagaagcaattgaaaactatattaaaagt
ttggagttaaaagagagtcatgatagtcccctcatcaccatttattgtttaataattgag
tactccaaaatgaatgataagaaactagtcgatgaatggacttctaaaggattatcacta
tatcaagagttgaatgatgaaactttagattcttattttcatcattatagattctataga
tcactacaccaaaaaggtggcttaagtgtttcagtggcaaaagaaaccattcagtatttt
aaagatatacaagattttcgtcatgttcataaatattgtactgcattggccgaatggtat
tattcaaaccggaaatataaactttcatcgatttacttccgagaagcaaatcgatatagt
tatatttataaaaaaattgataattgggaggatttataa
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