Sporosarcina sp. Te-1: J3U78_21215
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Entry
J3U78_21215 CDS
T08181
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
spoo
Sporosarcina sp. Te-1
Brite
KEGG Orthology (KO) [BR:
spoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spoo03400
]
J3U78_21215 (addA)
Enzymes [BR:
spoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J3U78_21215 (addA)
DNA repair and recombination proteins [BR:
spoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
J3U78_21215 (addA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QTD41209
LinkDB
All DBs
Position
4190907..4194623
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AA seq
1238 aa
AA seq
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MNIPVKPDDVTFTDDQWKAIWATGKDVLVSAAAGSGKTKVLITRMIEKVLNQDHPIDVDE
LLVVTFTNAAAAEMRHRMAEALEEAILEQPESVHLRRQLSLLNKAQISTLHSFCLNVVRQ
YAYLLDIDPGFRIADSTEASLLRDDTIGDVLEDAYNAQDPEPMYRLADSFTSDRSDQSIE
TLIDRLYDYSRVHPSPEQWLRMIPAEYEIDADATIDELGFIESLKLSIRHSLEEAAALTE
DMRRIALMPEGPEPLAATAEADLLWIREAIRRITEGTWVDTFEFFASLTWVKAGTIRKNS
CDEELAKRAKALRDAVKKLVNGLKESYFTRTPARLLDEMRLMAPMMHTLIELVIDFGERY
HCVKIDRGLVDFSDLEHYALQILSKEEKGKLVPSDIALDYLNRFAEVLVDEYQDTNLLQE
AIIQLVKRGGESDGNLFMVGDVKQSIYRFRLAEPNLFLGKYNRFTKTDGDQGMKIDLNAN
FRSRKEVLDATNFIFSQVMGERVGEIEYDEAAGLKYGARYPEKEMPARIALLYAGEEEGE
EQEATDLTGQSLKSSQAEARYMIKRIQDLLASGAEVTDAFSQKRRPLAYRDIVILMRSMT
WSGEIAEEFKLAGIPVYAELSQGYFEAIEVMIMLNTLRVIDNPYQDIPLASVLRAPFIGM
TESELAQVRLVHKKVPFYDALRTFIDQGGAGIAAQTQEKLQRFFLMFEDWRNLARRGSLA
DLIWQVYSDTHYYEMVGAMPNGKQRQANLRALHDRAIDYEKTSFRGLFRFLRFIDRMQKR
GDDFGAARFVSETEDVVRIMTIHASKGLEFPFVFLPGIGRQFNKMDFNEPYLFDQHFGLA
VKAIDPDLRITYTSLPFLAMKEKKQLEMRAEEMRILYVAMTRAKEHLEMIAAVKDIEKSI
GKWQDAQIVPPGEMLPEYVRSRANGYLDWIGPAIARHRDFEKMGLAYGGQLVDDPSIWDI
NALPVSTLLQVQQELEDMPEELDILEARETTPDELLVQEVKRRFDFSYPHMASVKKRSKQ
TVSELKRLSLLNDEPDFDDPFSTRDDELTTPYLHDRPAFMQSRTLSAAEIGTAMHTIMQH
IDIAQNHSVADVERLVTELTERQLLTPEEANAVDVRNVTRFFATPLADRLRKAKRVLKEL
PFTYAHDGSDGDHQILQGIADCLFEEPDGWVLLDYKTDRTRGRYHSEEELTQEMQRRYGI
QVSLYKKAIEEITKITIKEKLLYLFDSEMTLRVQEESV
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaacatacccgttaagccggatgatgtcacgtttacagatgaccagtggaaagcgatc
tgggcgactggaaaggacgtgctcgtttctgcggctgctggttctgggaagacgaaagtg
ctcattacccgcatgatcgaaaaggtgctcaatcaagaccatccgattgatgttgatgaa
ttgctagttgttacgtttacgaatgcagctgcggcggaaatgaggcatcggatggcggaa
gcgctggaggaagcgatactcgagcaaccggaatcagtgcacttgcgcagacagcttagc
ctgttgaataaagcgcaaatttctacgctgcattcattctgtttgaatgtggtccggcaa
tacgcctacttgctcgacatcgatccgggcttccggattgctgatagcacagaggcatcc
ctgctgcgcgatgatacgatcggagacgtgctggaagatgcctacaatgcgcaagatccg
gaaccgatgtaccggcttgcagacagcttcacatcagatcgaagcgaccaatcaatcgag
acattgatcgatcggctatatgattattcccgcgttcatccgtcacctgaacagtggctc
cggatgataccggcggaatatgagattgacgcagacgcgactattgacgagctcggtttc
attgagtcattgaaattgtctatcaggcattcgcttgaagaagcggcggcactgacggag
gacatgcgccggattgccttgatgcctgaaggcccggaaccacttgcggctacagcggag
gccgatttgctttggatacgggaggcgatacggcggattaccgaaggcacatgggtcgat
acgtttgaatttttcgcttcgctgacatgggtgaaagcaggcacaatccgcaaaaattcg
tgtgatgaagaattggcgaaacgtgcgaaagcgttgcgggatgccgtgaaaaaattggtg
aatggcctgaaagaatcctatttcacccggactcctgcacgtttgcttgatgaaatgcgt
ctcatggctccgatgatgcacacgctcattgaactggtcatcgatttcggggagcgatac
cattgcgtcaaaattgacaggggactcgtcgacttctccgatttggaacattatgcattg
cagatcctgtccaaggaggaaaagggtaagcttgtgccgtctgatattgcgcttgattat
ttgaaccgttttgcggaagtgctcgtggatgaataccaggatacgaacttgttgcaggaa
gcgatcatccagcttgtcaaacgcggcggtgaatcagatgggaaccttttcatggttggg
gacgtaaaacagtcgatctatcgtttccgtttagcggagccgaatctgtttctcggtaaa
tacaaccggtttacgaagacggatggcgatcaaggaatgaaaatcgacttgaatgcgaac
ttccggagcaggaaggaagtactggatgcgaccaatttcatcttctcccaagtaatgggc
gagcgggtcggtgaaatagaatatgatgaagccgccggtttgaaatacggtgcacgctat
cctgaaaaggagatgccggcccggattgccttactctatgctggagaagaagagggagag
gagcaggaagcgaccgatctgacgggacagagcttgaaaagttcccaggctgaagcgcgt
tatatgatcaaacggattcaggacttgttggcgtctggagcagaagtgacagatgcgttc
agccagaaacggcgtccgctcgcatatcgggatatcgtcatcctcatgcggtcgatgaca
tggtcgggcgagatcgcagaggaatttaaactggcgggcattccggtctatgctgaatta
tcacaaggctactttgaggcgatcgaagtgatgatcatgctcaatacacttcgggtcatc
gacaatccttaccaggacatcccgcttgcctctgtacttcgcgcgccgttcatcggcatg
accgaaagtgaattggcccaagtgcgccttgtgcacaagaaagtgccattttatgatgca
ttgcggacgttcatcgatcaaggaggggccgggattgcagcgcagacgcaggagaagttg
cagcggttcttcctcatgttcgaagattggcgcaatctggctcgccgaggatccttggcc
gatctgatctggcaagtgtattcggacacccattattatgaaatggtcggcgcgatgccg
aacggtaaacagcgccaggcgaacttacgggcacttcacgaccgggctatcgattatgag
aagacctccttccgcggactattccgttttcttcgctttatcgatcggatgcagaaacgg
ggagatgattttggtgcggcccgttttgtcagcgaaacagaagatgtcgtgcgaatcatg
acgatccacgcttcaaaaggactggagttcccgtttgtgttcctgcctggaatcggacgt
caattcaataagatggattttaacgagccgtatttgttcgaccagcatttcggactcgca
gtaaaagccattgatcctgatttgcggattacgtatacatccttgccgtttctcgcgatg
aaagagaagaaacaactggagatgcgcgcggaggaaatgcggattttgtatgtggcgatg
acgcgggccaaggagcatcttgaaatgattgctgcggtgaaggatatcgagaaatcaatc
ggcaagtggcaggacgcacagattgttccgcccggagagatgctgccggaatatgtgcgc
tcccgtgcaaatggctatctggattggatagggccagccattgcgaggcaccgtgatttt
gaaaaaatggggctcgcttatgggggacagcttgtcgatgatccttccatatgggacatc
aatgcgctgcctgtatccacattgctgcaagtccagcaggagctggaggacatgccggaa
gagcttgatattttggaggcgcgagagacgactccagacgaactgttagtacaggaagtg
aaaagacggtttgatttcagctatccgcatatggcttccgtgaaaaaacgctcgaagcag
accgtcagcgaattgaagcggctgtccttgttgaacgatgaaccggattttgatgatccg
ttttcaacgagagacgatgaattgacgacgccttatttacatgatcggcccgctttcatg
caatctcgcacactatccgctgccgaaatcgggactgccatgcatacaattatgcaacat
atcgatattgctcaaaatcatagcgtggcagacgtggaacggctcgtgacggaactgaca
gaacgacagttgcttacgcctgaagaagccaatgcggtagatgtccgcaacgtaacccgc
ttcttcgcaaccccgctggccgaccgcttgcggaaggcaaaacgggtcctgaaggaattg
ccttttacgtacgcgcatgacggaagcgatggagaccatcaaattttgcaagggatcgct
gattgtctttttgaagagccggatggctgggtcttgcttgattacaaaaccgacaggacg
cgggggcgttaccattcggaagaggagcttacgcaggaaatgcaaaggcgatatgggatt
caggtgagcctgtataaaaaagcgatcgaagaaattacaaagattacgattaaagagaag
ctgctctatctgtttgacagtgagatgacattacgtgttcaggaggaatcagtttga
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