Sporosarcina sp. P37: SporoP37_05160
Help
Entry
SporoP37_05160 CDS
T04826
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spop
Sporosarcina sp. P37
Pathway
spop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SporoP37_05160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spop03019
]
SporoP37_05160
03016 Transfer RNA biogenesis [BR:
spop03016
]
SporoP37_05160
Enzymes [BR:
spop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SporoP37_05160
Messenger RNA biogenesis [BR:
spop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SporoP37_05160
Transfer RNA biogenesis [BR:
spop03016
]
Prokaryotic type
tRNA degradation factors
SporoP37_05160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
S1CSD-TOTE-2
RNase_II_C_S1
eIF-5a
CvfB_2nd
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
ARK24130
LinkDB
All DBs
Position
complement(979089..981446)
Genome browser
AA seq
785 aa
AA seq
DB search
MDSKENELQERIFSLLKEESYKPSTVHEIQEELGLEQAAEFKELVKTLVQLEQNGKVVRS
RNNRYGSPEQMNLLRGKFIGHAKGFGFVVPEDVEGDDVFIPPHDINGAMNGDIVFVRVSG
SSFGDRREGAITKIVERKTSKVVGTYQAHDGFGFVLPDDKKLPMDIYIEKGHSLEAVDGQ
KVIVEITNWPNDEKSATGIVTQILGHKNDPGVDILSIIHKHGIEVEFPAEVMEHAKSVPT
TVQEDDFAGRRDLRNDLTMTIDGADAKDLDDAISVFTEENGSYRLFVHISDVSYYVTENS
PMDAEAADRGTSVYLTDRVIPMLPHRLSNGICSLNPGEDRLTLTCEMKVDHNGKVVEHEI
YPSVINSNYRMTYTDVYEIIDNKDEELSEKYKEIVPMLNDMAKLAAILRQKRQDRGAIDF
DFKESKILVDEKGWPTDVVIVERTVSERLIEEFMLIANETVAEHFHWLQVPFLYRIHEDP
KEEKLQRFFEFLTNFGIVVKGSGNQVHPRALQEIVESIEGLPEESVISTMLLRSMQQAKY
YQESLGHFGLSTEFYTHFTAPIRRYPDLIVHRLIRTYLFEKDLSSSTIGHWTARLPEIAQ
HTSDRERRAVDAERDTNALKKAQFMVDKVGEEFEGVVSSVTNFGMFVELENTIEGLVHVQ
NMNDDYYRFDDRQMMMIGERTAKQFRIGDEVKVRVISVKPEEQAVDFEIVGMKENFRGSR
KASPKVIQSGASGKGRSQGRGQGGKPSAGGGAKGSSDKRNKKYEKPKKKFYEGMPKKSKK
RPKKK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
ttggattcaaaagaaaatgaattacaagaacggattttttctttactaaaagaagaatcc
tataagccgtccactgtccatgagattcaagaagaactcggtctggaacaggcggcagaa
tttaaagaattggtaaaaacgctcgtacagcttgaacagaacggaaaagtcgttcgctca
cgcaataatcgctacggcagccctgaacaaatgaatttgcttcgcggtaaattcatcggg
cacgcaaaaggtttcggctttgtcgtaccggaagacgtggaaggtgacgatgtatttatc
ccgccgcacgatattaatggtgccatgaacggtgatattgtatttgtccgtgtatcgggc
agttcattcggtgaccgccgcgaaggtgctatcacaaaaattgtcgaacgcaaaacatcg
aaagtcgtcggaacctaccaggcacatgacggttttggatttgttttgccggatgataaa
aaactgccgatggatatttatatcgaaaaaggtcattcactggaagccgtagacggtcaa
aaagtgatcgttgaaattaccaactggccaaacgacgaaaagtccgcaacaggcatcgtg
acacaaatactcggccacaaaaatgatccgggcgtggacatcttgtcaattattcataag
catggcattgaagttgaattccctgcagaagtgatggaacacgcaaaaagtgtgccgaca
acagtccaggaagacgatttcgcaggccgcagagatttgcgcaatgacttgacgatgacg
attgacggagccgacgcgaaagacttggatgatgcgatttcagtattcacagaagaaaac
ggatcgtatcgcctgtttgttcatatttcagacgtcagctactatgtgacggagaactct
ccgatggacgcagaagcagcagaccgcggcacaagcgtttacttaacggaccgcgtgata
cctatgctgccgcaccgtctctctaacggaatctgttcattgaatccgggagaagaccgt
ttaacactgacatgtgagatgaaagttgaccataacggaaaagtggtcgaacatgaaatt
tatccgagtgtcatcaactcgaattatcggatgacatacacagacgtatatgaaatcatc
gacaataaagatgaagagttatccgagaagtataaagaaatcgttccaatgctgaacgat
atggcgaaactggcagctatactccgtcagaagcgtcaagatcgcggcgcaatcgatttc
gatttcaaagaatcgaaaattttggtggatgaaaaaggatggccgacagatgtggtcatt
gtggaacgcaccgtgtcagaacgcctaatcgaggagttcatgctgattgccaatgaaact
gtggcagagcacttccactggctgcaagttccgttcctgtaccgaattcacgaagatcca
aaagaagagaaactgcagcgcttctttgagttcctgacgaatttcgggatcgttgtcaaa
ggttcaggcaaccaagtacatccgcgcgcattgcaggaaatcgtagaatcgattgaaggg
ctgccggaagaatctgtcatctccacgatgttattgcgttctatgcagcaggcgaaatat
tatcaggaaagtctcggacacttcggtttgtcgacggaattctatacacatttcacggca
ccgatcagaagatatccggacttgatcgtgcatcgtttaatccgcacgtatttatttgaa
aaagacttgtcctcatctacaattggacactggacagcacgccttcctgaaattgcgcag
cacacgtctgaccgcgaacgccgtgcagtcgatgcagaacgtgatacgaatgcattgaag
aaagcacagtttatggtggataaagtgggggaagagtttgaaggtgtcgtttcatcggtc
acgaactttggtatgtttgtagagctggagaatacgatagaaggacttgtgcatgtccag
aacatgaacgacgactattatcgtttcgacgatcgccaaatgatgatgatcggagaacgc
acagcgaaacaattccgtattggagacgaagtgaaagtgcgtgttatttcggtgaagccg
gaagagcaggcagtagactttgaaatcgtcggcatgaaagagaacttcagaggctcccgc
aaagcatcgccaaaagtcattcagtccggtgcatcaggcaaaggaagaagccagggaaga
ggccaaggcggaaaaccgagtgctggcggcggagcgaagggttccagtgacaagcgcaat
aaaaagtacgaaaaaccaaagaaaaagttttacgaaggtatgccgaagaaatcgaaaaag
cggcctaagaaaaaataa
DBGET
integrated database retrieval system
