Sporosarcina sp. P37: SporoP37_10005
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Entry
SporoP37_10005 CDS
T04826
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spop
Sporosarcina sp. P37
Pathway
spop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SporoP37_10005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spop03400
]
SporoP37_10005
Enzymes [BR:
spop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SporoP37_10005
DNA repair and recombination proteins [BR:
spop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SporoP37_10005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ARK24963
UniProt:
A0A7U5GWW5
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All DBs
Position
1931827..1935360
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AA seq
1177 aa
AA seq
DB search
MGVIEQLFLEEKEIQGLLNDLEAGQDQQLVTGLSGGSKAIFFKLIQQSLTRPVLIVSPNM
LQAQRTYEDLSKLIDEAHLHLYTAEELVAADFSFASYELRAGRIDTLDHMARTGSGIYIT
PVAGLRKLLPSKERWLTHYVTAKTDDEIDVGIWLEKLVSMGYIRKDLVSAPGEFALRGGI
LDIYPLTMEEPVRIELFDTTIDSIRTFSAEDQRSTGKLDSITLLPATEFIWTPEELLKVS
QQVEQALGDSLNKIKSEDLQQQLLITVMQDTGMMKDGIVPDTMKKYASFSSEASAMLTDY
FPADGLIVFDELGRIQESVATLESEEQEYHLAMLEDGKMLHDTKLAWKYGQVLENIDQKR
LYLSLFTRAVPGFTIKKSISVSCKPMQQFHSQMPLLKNEIERWKQSKYNVFLLASSPERM
QAIQDILREYDIEAAIDGKPGKEGVLSIIEGDLSAGFELPFQKLAVVTDAEMFTGKPKRK
ARPPKLTNAERIKSYSEIKPGDYIVHVHHGIGKYYGVVTLDVKGIQKDYLDIRYRGEDKL
FVQADQIDLIQKYVASGEKEPKLHKLGGTEWTKTKRKVTAAIQDIADDLIKLYAKREAEK
GFAFSEDDDLQRSFENAFPYEETQDQLQSIAEIKKDMERARPMDRLLCGDVGYGKTEVAI
RAAFKAVTNGKQVAFLVPTTILAQQHYETMKERFADYPVTVSLLNRFRTKKEQDETIKGL
KAGTVDIVVGTHRLLSKDVVYQDLGLLVVDEEQRFGVTHKEKLKQLKTNVDVLTLTATPI
PRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHNGGLVREAIEREMGRGGQVFYLYNRV
EDMDRKVQEIRDLVPEARIASAHGRMGEAALEAVIMSFLEGEFDVLVTTTIIETGIDIPN
VNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYSYMLYQRDKVLTEVAENRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQLLQEAIEERQTGVVKEDKADVE
ISLPINAYLPETYIQDGYQKIQMYKRVKAITGDEDYLELVDEMIDRFGDMPFEADLLLRV
GRMKAWGRKAGVVSIKNVQGVAEIRLSEEGTARADGAKLMERSLKYGHAVGLTIDNGQII
ITVNEKKSNQYTEFDMVEDMVHTMQETAKEVESSDAL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgggagtaatagagcagctttttctggaagagaaagagattcagggcctgctgaatgat
ttagaagccggacaggaccaacagttggtcacaggcttatccggcggatcaaaagcaata
ttctttaaactgattcagcagtcactgacacgtccggtcctgattgtctcgccaaatatg
ctccaagcccagcgtacgtatgaggacttgagcaagctgatcgacgaggcgcacttacac
ctctatacagcagaagaactggtggcggcagatttttcatttgcgagttacgaactgcgt
gccggccgtattgacacgcttgatcatatggcgcgtacaggctccggcatttatatcaca
ccggttgccggactgcgaaagctgttgccgtctaaggaacgctggctgacgcattatgtg
acagcgaagacggacgatgagattgacgtgggaatttggctcgagaaactggtatccatg
ggctatatacgaaaagacctggtgagtgcaccgggtgaatttgcgttgcgcgggggaata
ctggatatttatccgctgacgatggaagaacctgtgcggatcgagctttttgatacgacg
attgattcgatacggactttttctgcggaagatcagcgttcgacaggcaagttagattcc
atcacactgcttccggcgacagaatttatttggacgcctgaagaactattgaaagtttcg
cagcaagtggagcaggcactcggtgatagtctgaacaaaattaagagcgaagatttgcag
cagcaacttctaataaccgtcatgcaggataccggcatgatgaaagacggtattgtgccg
gatacaatgaagaaatatgcgtccttctcttcggaagccagcgccatgctgacagattat
tttcctgccgatggattgattgtctttgacgaactcgggcgtatacaggaatctgtcgca
acattggaatcagaagagcaggaatatcatctggcaatgctggaagacggaaaaatgttg
cacgacacgaagcttgcctggaaatacgggcaggtactggagaatattgatcagaaacga
ttatatctgtctttatttacgcgcgcggtgccaggctttacaatcaagaaatctatttcg
gtttcctgtaagcctatgcagcagtttcacagtcagatgccattattgaaaaatgaaatc
gagcggtggaagcagtccaagtacaacgtctttcttcttgcttcttcacctgaacgaatg
caggcgatacaggatattttacgggagtacgatatagaagcggcaatagacggcaaaccg
ggaaaagaaggtgttttgtcgattattgaaggagatctgtcagcgggctttgagcttcca
ttccaaaagctggccgtcgttacggatgcggaaatgtttacaggtaaaccgaaacgcaaa
gcacgtccgcctaagctgacaaatgcggaacggatcaaaagttattccgaaatcaaacct
ggagattatatagttcacgtccatcacggaatcggtaaatactatggcgtggtgacgctt
gacgttaaaggtattcagaaagattatctggatattcggtaccgcggtgaggataagctg
ttcgttcaagccgatcagattgatttaatccaaaaatatgtggcgtctggggaaaaagag
ccgaaactgcataagcttggcggtacggaatggacgaaaacgaaacgtaaagtaacggct
gccattcaagatattgccgatgacttgatcaaactgtatgccaagcgggaagcggagaaa
ggttttgcgttcagcgaggacgacgatctgcagcgttcgtttgaaaatgcctttccatat
gaagaaacacaagaccagctgcagtctattgcggaaattaagaaagatatggaacgtgcg
cggccaatggatcggctattatgcggagacgtaggatacgggaaaacagaagtcgcaatc
cgagcggcattcaaggctgtgacaaacggcaagcaagtagcgttcctcgttccgacgact
attctggcacagcagcactacgagacgatgaaagagcgcttcgcggactatcctgtgaca
gtatctttgctgaaccggttccggacgaagaaagagcaggatgagaccattaaagggctt
aaagcgggaactgtcgatattgtggtcggtacgcaccgtctgctttcaaaagacgtcgtc
taccaggatctggggctgcttgtcgtggatgaagagcagcgttttggcgtcacgcataaa
gaaaagttgaaacagctgaagaccaacgtggatgtactgacactgaccgccacgcctatt
ccgcggacattgcatatgtcgatggtcggcgtacgggatttgtctgttattgaaacgcct
ccggctaaccgtttccctgtccaaacgtatgtcatggaacataacggaggcttggtgcgt
gaagcgatcgagcgggaaatgggacgcggcgggcaagtcttttatttatacaaccgcgtg
gaggatatggaccggaaagtgcaggagatccgtgatctggtgccagaagcgcgtattgct
tcggcgcatggccggatgggtgaagctgcgcttgaagcggtgatcatgagtttccttgaa
ggggaatttgatgtgctcgtcacaacaacgattattgaaacagggattgatattccgaac
gtcaatacattaattgttcatgacgcggaccgaatggggttatcgcagctctatcaatta
cgcggacgagtcgggcgttccaatcgtgtggcgtacagctacatgctctatcagcgcgat
aaagtgctgacagaagtggcggagaaccgtttgcaggcaattaaagagtttacggagctt
ggatccggttttaaaatcgccatgcgggatctatcgatacgcggtgcaggaaacttactc
ggttcccagcagcacggcttcatcgattctgtcggtttcgatttgtattcgcagttactg
caggaagcgattgaagaaagacagacaggagtcgtgaaagaagacaaggcggatgtagaa
atttcattgccgatcaatgcctaccttcctgaaacgtatattcaggatggctatcagaaa
atccagatgtataagcgggtgaaagcaattaccggggacgaggattatttggagctggtt
gacgaaatgatcgaccgcttcggagatatgccgtttgaagccgacttgctgcttcgtgtc
ggacgaatgaaagcctggggacgaaaagcaggcgtagtttccattaagaatgtgcaaggc
gtggcggaaattcgcttgtcagaagaaggaacagcgcgtgctgatggcgcaaagcttatg
gagcgatcattgaaatacggtcacgctgttggactgacgatcgataacgggcaaataata
attacagtaaatgaaaagaaatccaatcagtacacagagttcgatatggtggaggatatg
gtgcacacgatgcaggagactgcaaaggaagtagaatcttcggatgccttgtaa
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integrated database retrieval system
