Sporosarcina sp. P37: SporoP37_13875
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Entry
SporoP37_13875 CDS
T04826
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spop
Sporosarcina sp. P37
Pathway
spop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SporoP37_13875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spop03019
]
SporoP37_13875
Messenger RNA biogenesis [BR:
spop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SporoP37_13875
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ARK25633
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Position
complement(2781186..2782853)
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AA seq
555 aa
AA seq
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MKSIKNNETAVFALGGLGEIGKNTYCVQFQDEIIIIDAGIKFPEDELLGIDYVIPDYTYL
ERNIDKIKGLFITHGHEDHIGGIPYLLRKVNVPVYGGKLAIGLLRNKLEEHGLLRTTEIH
EIEEDDFIKFRKTAVSFFRTTHSIPDAYGVVVKTPSGNIVHTGDFKFDFTPVGEPANLHK
MAKIGSEGVLCLLSDSTNAEVPNFTMSERKVGESLNDIFRTVDGRIIFATFASNIHRLQQ
VIEAAQIFDRKIAIFGRSMDNAITIGRELGYIDAPKELFVDSQSLNRLPANKVMILCTGS
QGEPMAALSRIANGTHRQVQIQPGDTVIFSSSPIPGNTLSVNKTINSLFRAGAEVIHGPL
NNIHTSGHGSQEEQKLMLRLIKPKYFMPIHGEYRMMNMHSQLAIDCDVEPDNIFIMGNGD
VLALTDSSARLAGRVPSGDVYIDGSGIGDIGNVVLRDRRILSEDGLVIVVATIDTKKNRL
VSGPDLISRGFVYMRESGAMINEAQYMLSKTLQRKLAAKPDSVNNLKGDIIDTLVPYLYE
KTKRKPMILPVIMEL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctataaagaacaatgaaacagccgtttttgccctaggcggactaggtgaaatc
ggtaaaaatacgtattgtgtacaattccaggacgaaatcattattattgatgccggcatt
aagttccctgaagatgaattactaggcattgattacgtaattccggattacacatactta
gaacgcaatatcgacaagattaaaggacttttcatcacacacggccacgaagatcatatc
ggcggaattccttacttgctgcgcaaagtgaacgtacctgtatatggaggcaaactggca
atcggactgcttcgcaataagctggaagagcacggcctattgcgcacaacggaaattcat
gaaattgaagaagatgatttcatcaagttccgtaaaacagcagtatcgtttttcagaact
acacacagtattcctgatgcgtacggagtagtcgtcaaaacaccttcaggcaatattgtt
catacaggagacttcaagtttgacttcacgcccgtcggtgaaccagccaacttacacaag
atggcgaagatcggcagtgaaggcgtcctttgcctattgtcagacagtacgaatgcagaa
gtgccaaactttacgatgtctgaaagaaaagtcggagaaagcctgaatgatattttccgt
acagtagacggccggattattttcgctacattcgcttcaaacattcatagactgcagcaa
gtcatagaagcagcacagatcttcgaccgtaaaatcgcaattttcggacgaagcatggat
aatgcgattaccatcggacgcgaactcggatatattgatgcgccgaaggaactgtttgtg
gattcgcagtcactcaaccgcctccctgccaataaagtcatgattttatgcaccggcagc
caaggggaaccgatggcggcattatcccgcattgcaaacggtacgcacagacaagtgcaa
atccagcctggagacacagtcatcttttcatcatcaccaattccaggaaatacactcagc
gttaacaaaacgatcaactctctgttccgtgcaggcgcagaagtaatccacggtccatta
aacaacatccatacatccggacacggatcacaggaagagcagaaactcatgctgcgttta
atcaaaccgaagtacttcatgccgatacacggtgagtaccgtatgatgaatatgcattct
caacttgcaatagactgcgatgtcgagccagataatattttcatcatggggaatggagac
gttcttgcacttactgattcatcagcaagacttgcagggcgtgtaccttcaggcgatgtc
tacattgacggcagcggaattggagatatcggcaacgttgtactgcgtgaccgccgcatc
ctgtcagaagatggcctggtgatcgttgtagccacaattgatacgaagaagaaccgctta
gtttcgggtcctgatctcatttctcgcgggtttgtctatatgcgcgaatcaggagcaatg
atcaatgaagcacagtatatgctgtccaaaacattacagcgtaaactggctgcaaaaccg
gattctgtgaacaacctaaagggcgatattattgatacactcgttccgtatctgtatgaa
aaaacaaagcgtaaacctatgattcttcctgttattatggaattgtaa
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