Sporosarcina sp. PTS2304: DV702_11530
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Entry
DV702_11530 CDS
T05572
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spos
Sporosarcina sp. PTS2304
Pathway
spos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DV702_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spos03019
]
DV702_11530
03009 Ribosome biogenesis [BR:
spos03009
]
DV702_11530
Enzymes [BR:
spos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DV702_11530
Messenger RNA biogenesis [BR:
spos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DV702_11530
Ribosome biogenesis [BR:
spos03009
]
Prokaryotic type
rRNA helicases
DV702_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
DUF4422
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXI00291
UniProt:
A0A345NZ32
LinkDB
All DBs
Position
complement(2419607..2421121)
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AA seq
504 aa
AA seq
DB search
MTKFSELNISETTQKALLRMGFEEATPIQEGTITFGMEGRDVIGQAQTGTGKTAAFGIPI
IEKLDPKSTAVQALVIAPTRELAIQVSEEIYKVGFGSRAKVLSVYGGQEIGRQIRALRNN
PNIVVGTPGRILDHINRKTLKLDNVQTLVLDEADEMLNMGFIEDINTILASVPAERQTLL
FSATMPGPIRKIAETFMKNPEIVKIKSKEMTVENIEQFFVKSHEREKFDVLSRLLNVQQP
ELAIVFGRTKRRVDELAHALSIRGYIAEGIHGDLTQAKRMSVLRQFKDNKIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGIAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTSDEALLEQKKIAVEALTEAIEQNNSEDYAGLAAQLLEKFDPKDIVSAALR
SLTKDVDETPVSITEERPLPSRRPSSRDRGGYKGGNRSGGGGRSQGGRSRSFSGSAGGAR
RSGGREGGGRRDGASRRSSGRTER
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaagttttcagaactaaatattagtgaaacaacacaaaaggctttgctacgcatg
gggtttgaagaggcaacaccaatccaagaaggtactattacatttgggatggaaggccgc
gacgtaatcgggcaagcacaaacaggtacagggaagacagcagcattcggtattccgatc
attgagaaattggatcctaaaagcactgcagttcaagcgttggttattgcaccgactcgt
gagttggctatccaagtatcagaagaaatttataaagtaggtttcggcagccgtgcgaaa
gttctttccgtatacggcggacaagaaatcggacgtcaaatccgtgcactacgcaataat
ccaaacatcgtagtaggtactccaggacgtattttggatcatattaaccgtaaaacttta
aagctagacaatgttcagacgcttgtattagacgaagcagatgaaatgttgaacatggga
ttcattgaagatatcaacacgattcttgcatctgtgccggctgagcgccagacgttgcta
ttctcagcaactatgcctggacctatccgcaaaattgcagaaacatttatgaagaatcct
gaaattgtcaagatcaagtctaaagaaatgacggttgaaaatatcgaacaattcttcgta
aaatcacacgagcgcgaaaagttcgatgtgttatcaagactgttgaatgttcaacaacca
gaattggcgatcgttttcggtcgtacgaagcgtcgtgtagatgagttggctcatgcactt
agcatccgcggctatatcgctgaaggaatccacggtgatttaacacaagcgaagcgtatg
tctgtattgcgccagtttaaagataataaaatcgatgtattagtagcgacagatgtagcc
gctcgtggcttggatatttcaggtgttacacatgtatacaactttgatattccacaagat
ccagaaagctatgttcaccggatcggtcgtacaggccgcgcaggtaaaagtggaattgcc
gttacattcgtaacaccacgggaaatggggtacttacgcatcgttgaggaaacgactaag
aagcgtatgacacctttacgtccaccaacatctgacgaagcgttgcttgagcagaagaaa
atagcagtggaagctttgacagaagctattgaacaaaataattcagaagactatgctgga
ttggcggcgcagttgcttgaaaagttcgatccaaaagatatcgtctcagcggctcttcgt
tcattgacgaaggatgttgacgaaacaccagttagtattactgaagaacgtccattgcct
tctcgcagaccttcttcacgtgatcgcggcggctacaaaggtggcaatcgcagcggtggt
ggcggacgttcacaaggtggacgtagcagaagtttcagcggtagtgctggcggagcgaga
cgtagtggcgggcgcgaaggcggcggcagaagagatggagcttctcgtcgtagcagtggc
cgtacagaaagataa
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