Sporosarcina sp. PTS2304: DV702_13990
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Entry
DV702_13990 CDS
T05572
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spos
Sporosarcina sp. PTS2304
Pathway
spos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DV702_13990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spos03400
]
DV702_13990 (mfd)
Enzymes [BR:
spos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DV702_13990 (mfd)
DNA repair and recombination proteins [BR:
spos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DV702_13990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
IstB_IS21
RgpF
Motif
Other DBs
NCBI-ProteinID:
AXI00729
UniProt:
A0A345P0C0
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All DBs
Position
2913861..2917388
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AA seq
1175 aa
AA seq
DB search
MGVIEQLFLEEKEIQDLLKGLEAGQDQQLITGLSGGSKSIFFKIIQQSLTRPVLIISPNM
LQAQRMYEDLVKQAGEEQVHLYNAEELVAADFSFGSYELRAGRIETLDHMARKGRGIYIS
PVAGLRKLLPSKERWLTHYVTAETDEEIDIGSWLVKLVSMGYMRKDLVSAPGEFALRGGI
LDVYPLTMQEPVRIELFDTTIDSIRTFSAEDQRSTGKLESITLLPATEFIWTPEELLDVS
RKVEQALGDSLTKIKSEELQQQLLTTVMHDIGLMQSGIVPDTMKQYASFSAQASATLIDY
FPAEGIVIFDELGRVQESVTALETEEQEFHLAMLEDGKMLHDTKLAWTYQEVLSKIHQQR
IYISLFTRAIPGFTIKKSIAISCKPMQQFHGQMPLLKNEIERWMQGNYNVFLLAASAERI
ADIQGILREYDIEAVINGKPTKEGILSIIEGDLSVGFELPFQKLAVLTDTEMFTGKPKRK
ARPSKLTNAERIKSYSEIQIGDYIVHVHHGIGRYYGVVTLEVGGIQKDYLDIRYRGDDKL
FVQADQIDLIQKYVASGEKEPKLHKLGGTDWTKTKRKVTAAIQDIADDLIELYAKREAEK
GFAFSEDDDLQRSFENAFPYEETADQLQSIDEIKKDMEKERPMDRLLCGDVGYGKTEVAI
RAAFKAVTNGKQVAFLVPTTILAQQHYETMKERFANYPVTVSILNRFRTKKEQDETIKGL
KAGTIDIVIGTHRLLSKDVVYQDLGLLVVDEEQRFGVTHKEKLKQLKTNVDVLTLTATPI
PRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEYNGGLVREAIEREMGRGGQVFYLYNRV
EDMDRKVEEIRELVPEARIASAHGRMGEAALEAVIMSFLEGEYDVLVTTTIIETGIDIPN
VNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYSYMLYQRDKVLTEVAENRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQLLQEAIEERQTGVTKEDKIDVE
ISLPINAYLPETYIQDGYQKIQMYKRVKAITSDEDYLELVDEMIDRFGDMPFEADLLLRV
GRMKAWGRMAGVESIKKIQDTVEIRLTDEGTARADGAKLMEHSLKFGHAVGLSLENGQII
VTVNEKKSNKFTEFDMIEDMVHIMQETAKEAPPAV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgggagtaatagaacagctatttttagaagaaaaagagattcaagacttactcaaaggc
ttagaggctggacaagatcaacagttaataacaggtttatccggcggttctaaatctatc
ttctttaaaataattcaacaatcattaacgcgtccggtgttgataatctcaccaaatatg
cttcaagcacagcgtatgtatgaggatttggtcaagcaggcgggtgaggaacaagttcat
ttatacaatgcagaagaacttgtagcagcagacttttcgtttggcagttatgaattacgg
gcgggacgaattgaaacgttggatcatatggcgcgcaaaggcaggggaatttatatttcg
ccggttgctggtctaagaaagcttttaccgtcaaaagaacgctggttgacacattatgtg
acagcagagacagacgaagagattgatataggaagctggctcgtgaaacttgtctctatg
ggctatatgagaaaggacctggtgagtgcaccgggtgaatttgcgttgcgtggcggtatt
ttagatgtctatcctttgacgatgcaagagcccgttcgtattgaattattcgatactacg
atagattcgattcggacgttttctgcggaagatcaacgttcaacgggaaagctggagtcg
attacactgttgccggctacagagtttatttggacgccggaagaactgctggatgtttcc
cgtaaagtagagcaagcactcggggacagtttaacgaaaataaaaagtgaagaattacaa
caacaattattgacaacggttatgcatgacataggtttaatgcagtcgggtattgtacca
gacacaatgaagcaatacgcttcgttctctgcccaagcgagtgctacactgatagattac
tttccggcagagggaattgtcatatttgatgagctaggacgagtacaagaatctgtcact
gcactagaaacggaagaacaggaatttcatctagctatgttagaagacggaaaaatgtta
cacgatacgaagcttgcgtggacatatcaagaagtactgagcaaaatccatcaacaacgc
atatatatatcattatttacacgagcgataccaggatttacgattaaaaagtctatcgcg
atttcttgcaaaccgatgcaacagtttcacgggcagatgcctttattaaaaaatgaaata
gagcgttggatgcaaggtaactataatgtcttcttactggcagcttctgcagaacgcata
gcggatatacaaggaattttgcgagagtatgacatagaagcagttatcaacggcaaacct
actaaagaaggcatcctatccatcatagagggtgatttgtctgtcggatttgagttgcca
tttcaaaagctggcagttcttacagacacggagatgttcactggaaagccaaaacgtaaa
gcgcgtccatcaaagttaacgaatgcggaacggattaaaagttattcagagatacaaatc
ggtgattatattgttcacgtccatcacggaattggacgctattatggtgtagtgacacta
gaagtgggcggtatccaaaaggattacttggatattcgttaccgcggagatgataagtta
tttgtacaagccgatcaaattgatttaatccaaaagtatgtggcttctggtgaaaaagag
ccgaaattgcataaactgggcggcacagattggacaaagacaaagcgtaaagtaacagcg
gcaattcaagacattgcggatgacttaatcgagctgtatgcaaagcgtgaagcggaaaaa
ggatttgcttttagtgaagatgatgatttacaacgatcgttcgaaaatgcttttccatat
gaagaaacggcagaccaattacaatcaattgatgaaataaaaaaggatatggaaaaagag
cgtccaatggatcgtttattatgcggcgatgttggttatggaaaaacggaagtggctatt
cgcgcagcatttaaggctgtaacgaatggcaaacaagtagcgtttttagtaccgacaacg
attttagctcagcaacactacgaaacaatgaaagaacgttttgcgaactatccggtaacc
gtttcgatacttaatcgtttccgaacgaagaaagagcaagatgagacgattaaagggtta
aaggctggaactattgatattgttatagggactcatcgtctgctttcaaaagatgttgtc
tatcaagacttaggcttgttagtagtggatgaagagcaacgttttggcgtgacgcacaaa
gaaaagttaaagcagttaaaaacaaatgtagatgttctaacgttaacggctactcctatt
ccgcgtacactgcatatgtccatggtaggagttcgcgatttatctgtaatcgaaacacct
cctgcgaatcgctttcccgttcaaacatatgttatggagtataatggcgggctagtacga
gaagctattgaacgggagatgggacgcggcggacaagtattttatttgtataatcgggta
gaagatatggatcgtaaagttgaagaaattcgggaacttgtacctgaagcgcgtattgcc
tcggcacatggccgtatgggggaagctgcacttgaggcggtcattatgagttttctcgaa
ggagaatatgatgtattagtgacaacgacaatcattgagacaggtatcgatattccaaat
gttaatacattgattgttcatgatgcagatcgtatgggtctgtcacaactctatcaattg
cgcggccgtgttggtcgttcgaaccgtgtagcgtatagttatatgttgtatcaacgggat
aaagtgttaactgaagtggcggaaaaccgtctacaagcgattaaagagtttactgagctc
ggttcaggttttaaaattgcgatgcgggatttatcaattcggggggcaggaaacttactc
ggctctcagcaacatggatttattgattctgttggattcgatttgtattcccagttattg
caggaagcgattgaagagcgtcaaacaggtgttacgaaagaagataaaatagatgttgaa
atatcgttaccgatcaatgcttatttacctgaaacatacattcaagacggttatcaaaag
atccagatgtacaaacgtgtaaaagcgattacgagtgacgaggattatttggagctagta
gatgagatgatagaccgttttggtgatatgccattcgaagctgacttactattgcgcgtc
ggacgtatgaaagcgtggggacgtatggcgggtgtggaatcgatcaaaaagattcaagac
acggtagaaatccgattaacagacgaaggcactgcgcgtgcagacggtgcaaaactaatg
gagcattctttgaaatttggtcatgcagttggattatctcttgaaaatgggcagatcatc
gtaactgttaatgaaaagaagtctaataagtttactgaattcgacatgattgaagacatg
gttcatataatgcaggaaactgcaaaagaagcaccgcctgctgtgtaa
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