Sulfitobacter pontiacus: G6548_03220
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Entry
G6548_03220 CDS
T06732
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spot
Sulfitobacter pontiacus
Pathway
spot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6548_03220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spot03019
]
G6548_03220
03009 Ribosome biogenesis [BR:
spot03009
]
G6548_03220
Enzymes [BR:
spot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6548_03220
Messenger RNA biogenesis [BR:
spot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6548_03220
Ribosome biogenesis [BR:
spot03009
]
Prokaryotic type
rRNA helicases
G6548_03220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ThylakoidFormat
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QLL41579
LinkDB
All DBs
Position
complement(688756..690951)
Genome browser
AA seq
731 aa
AA seq
DB search
MIQTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDD
EKFGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAH
IVVATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFS
ATVPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKN
AIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAAR
GIDLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLK
VEWANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRA
RQSAPEQLAEPGTPADERPRGDFGPSVWFSISIGRNDDAEPRTILPMICRMGDLTKDDVG
AIRVQPSHTFVEILATSADKFTNALGPDMKVEDGAVVTKLDKAPDLSRGPKPGGRGPKPN
RGGPRSDNGPRPDRGPRPERAPYDPDAPRAPRKPRAASTEEASVTYDKPRGPRPDKGFDK
PRGDKPKFDKPKAPKGERPPKSHKTERSPMKPGATPKPKSAGKPDSFDKPGGKPKAKAVW
KKEKPADRGADRPRGDGKPADKPFKARAADPSKRFVPPGKLGAKPKGGKPSGKAGGGDAA
PKRGKSSFRPK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
ttgatccaaaccatcgcagacgcgcttgccacccaaggctatgattcgcttacccccgtc
caagaggcggttaccaacccagatctggtcgaggccgaccttctggtgtcagcccaaacg
gggtccggcaagacagtggcctttggtctggccatcgcaccgacccttttgggcgacgat
gaaaaattcggacacgccggtgcgcccctggcgctgatcatcgcaccaacgcgcgaattg
gccatgcaagtcagccgcgagctaacgtggctttatggcaaggccggtgcggtcgtgacc
acctgcgtgggcggcatggacacacgcaccgaacgtcgtgcgctggaccgtggcgcgcat
atcgtcgtcgcgacaccgggccgcctgtgcgaccacatcaaacgcaacaacatcaacctg
tccgacatccgcgccgtggtgctggatgaagcggacgagatgcttgatctgggtttccgc
gaagagctggaattcatcctctccgaagcgccggaagagcgccgcacactgttgttctcg
gccaccgtgcctgcggcgatcgccaagctggccaaatcctaccagcgtgatgcgcagcgc
gtcgaaaccgtgggcgaaaagaaacaacacgccgacatcgaataccgtgcgctgaacgtg
cacccgcgcgacactgaaaacgcgatcatcaacgtgctgcgcttttacgaggcgaaaaac
gccatcgtcttctgcaacacccgcgccgccgtcgcacgcctgaccacccgcttcaccaac
cgcggcttttcggtcgtggcgctgtcgggcgagctgacgcaatccgaacgcaccaacgcg
ctgcaagcgctgcgcgacgggcgcgcgcgcgtctgtatcgcgacagatgttgccgcacgc
gggatcgacctgcccaacctcgaactggtggtgcatgccgatctgccgtcgaactctgac
acgttgctgcaccgctcgggccgtaccggtcgtgccggtcgcaagggggtgtccgcgctg
atcgttcccgccaagatgcgcagcaaggcaaaccgtctgctgggcggcgccaagctgaag
gtcgaatgggccaacccgccctctgctgaagaagtgaatgccgaagacgaaaaacgtttg
ctggccgattccgcatggtctgacccgatccccgatgacgcagcgggctttgttgccaat
ctggtcgaacagttcagcgccgagcaactggcgacggcctttgtgaacctgtaccgtgca
cgccagtccgcgcccgagcagctggcagagcccggcacccctgccgacgaacgcccccgt
ggcgactttggcccgtcggtctggttctcgatctcgatcgggcgcaacgatgacgccgaa
ccccgcaccatcctgccgatgatctgtcgcatgggcgatctgaccaaggatgacgtgggc
gcgatccgcgtgcagcccagccatacctttgtcgagatcctcgcgacctcggcagataaa
ttcaccaacgcgcttggccccgacatgaaggtcgaagacggcgcggttgtgaccaagctg
gacaaggcccccgatctgtcgcgcgggcccaagcccggcggccgtggccccaaaccgaac
cgtggcggcccccgttctgacaacggcccgcgtcccgatcgtggccctcgccccgaacgc
gcaccctatgaccccgacgcaccacgtgcaccgcgcaaaccacgtgcggccagcaccgaa
gaagcatcggttacctacgacaaacctcgcggcccgcgccccgacaaagggttcgataaa
cctcgcggcgacaagccgaagtttgacaagcccaaagcccccaaaggcgaacgcccgccc
aagtcgcacaagaccgaacggtctccgatgaagcccggtgccacgcctaaacccaagtct
gcgggcaagcctgacagctttgacaaacccggcggaaagcccaaagccaaagccgtctgg
aaaaaggaaaagccagcggatcgtggggcggaccgcccccgtggcgacggcaaaccagcg
gataaaccgttcaaggcccgcgccgctgacccgtcgaaacgctttgtcccaccgggcaaa
ctgggtgcgaaacccaagggcggcaaaccctcgggcaaagccggtggcggcgatgcagcc
cccaaacgcggcaagtcgagctttcgcccgaaataa
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