Sulfitobacter pontiacus: G6548_10265
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Entry
G6548_10265 CDS
T06732
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spot
Sulfitobacter pontiacus
Pathway
spot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6548_10265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spot03019
]
G6548_10265
03009 Ribosome biogenesis [BR:
spot03009
]
G6548_10265
Enzymes [BR:
spot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G6548_10265
Messenger RNA biogenesis [BR:
spot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G6548_10265
Ribosome biogenesis [BR:
spot03009
]
Prokaryotic type
rRNA processing factors
G6548_10265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QLL42896
LinkDB
All DBs
Position
complement(2111579..2114506)
Genome browser
AA seq
975 aa
AA seq
DB search
MPKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRLALMEEERAYAEAQAAKEDEDEKPKRRTRSRSRS
KSKAEDTVSDDATVSKDADATDSDQINGMQTVDLDDEEGSSPMERVAETPVEEPDGDDSK
AEGDTPKAAKADAKDAANPDADDQDDSDDADDSDDSPKAKDASSKDDSIESVADDDDHDD
LRTARKPRPKRYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNAADRKKLKEIANEIQVPKGAGLIVRTAGAQRTKAEIKRDYEYLQRLWEQIR
ELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVFVEGERGYRIAKDFMKMIMPSHAKNV
KLYSETLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIE
QTATKTNLEAAAEVARQLRLRDLAGLIVIDFIDMDERRNNAAVEKLMKEKLKTDRARIQV
GRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLIRSDDNLALSILRQIEEEGTRKRS
REVLITAPVGIANFLMNQKREHIAHIEGRYGMAVRIEGDPALVSPDFSLEKFKTATRVVT
PIEHVVSVDTSIMDEVDDLDVDAEADADNADNEPTGNGNGGQNQHNGSDDDNDGEGKPKR
RRRRRRRRGGKSNGDDAANGENNGDSNTNGDNGDSDAPAQTEADTAGAKDDAKTDATADA
ASDDAKPQDKPKRTRSRTRKPKADAAAEATVDADAKTSEDAKPAETTPADAEAAEDAPKP
KPKRTRTRKPKAAPVEAAEEAPKPEETPAPKEQPTPEPKPEPEVTPDAPTPEPAKEPTPI
PTPEPTPAQPSQPAEVEQTPAPTEVPDSTPTEMPPAQEIQPEPPVTEVPQPEAAPQAEPE
KPAKPKRRGWWSLGG
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagaaaatgcttatcgatgccacccacgctgaggaaactcgcgttgttgtggtt
gacggaaacaaggtcgaagaatttgactttgaatcagagaataaacgccagctagctggc
aatatctacctcgcgaaagtcacgcgggtcgaaccttcgttgcaggccgcgtttgtggat
tatggcggcaaccgtcatggtttcctcgccttttcggaaattcaccccgattactaccag
atccccgtcgctgaccgtctggcgctgatggaggaagagcgtgcctatgccgaagcgcag
gccgccaaggaagacgaagacgaaaagcccaaacgccggacacgctcgcgcagccgcagc
aagtccaaggccgaagacaccgtgtccgatgacgcgaccgtcagcaaagacgcggacgcg
accgacagcgaccagatcaatggcatgcagaccgtcgatctggacgatgaagaaggctcc
tctccgatggagcgggttgccgaaacgcctgtcgaagagccagacggcgatgacagcaag
gcagagggtgacacgcccaaggccgccaaagcagatgcgaaagacgccgcaaaccctgat
gccgatgatcaggacgacagcgacgacgcggatgacagcgacgatagccccaaggctaaa
gatgcgtcctccaaggatgacagcatcgaatccgtggcggatgacgatgaccacgacgat
ctgcgcaccgcgcgcaagccacggcccaagcgctataaaatccaggaagtcgtcaaggtg
cgtcagatcctgctggtgcaggtcgttaaagaggaacgtggcaacaaaggtgccgcgctg
acaacctatctgtcgctggccggtcgctattgtgtgctcatgcccaacaccgcgcgtggg
ggcggcatcagccgcaagatcaccaacgccgcggaccgcaagaagctgaaagagatcgca
aacgaaattcaggtgccaaaaggtgccggtctgatcgtgcgcaccgccggtgcacaacgc
accaaggccgagatcaagcgcgactacgaatacctgcaacgcctgtgggaacagatccgc
gagctgacgctgaaatccatcgcgcccgccaagatctatgaagaaggcgacctgatcaaa
cgctcgatccgcgacctttataaccgcgagattgacgaggtgtttgtcgaaggtgaacgc
ggttaccgcatcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtg
aagctctatagcgaaacactgcccttgttcgcgcgctatcaggtcgaaagctacctctcg
ggcatgttcaaccccacggtacagctgccttcgggcgggtatatcgtgatcggtgtgacc
gaagcgcttgttgcgatcgacgtgaactcgggccgggccaccaaggaaggctccatcgaa
cagaccgcgaccaagaccaatctggaagccgccgccgaagtcgctcgccagctgcgtctg
cgcgatctggccggtctgatcgtcatcgactttatcgacatggacgagcgtcgcaataac
gccgccgttgaaaagctgatgaaggaaaagctgaaaaccgaccgtgcgcgtattcaggtg
ggccgtatttccggctttggcctgatggaaatgtcgcgccagcgtctgcgtcccggcatg
atcgaggcgacgacccagccgtgccacgcctgtcacggcaccggcctgatccggtcggac
gacaaccttgcgctgtcgatcctgcgccagattgaggaagagggcacccgcaaacggtcg
cgcgaggtattgatcaccgcgcctgtgggcatcgctaacttcctgatgaaccagaagcgc
gaacatattgctcacatcgaaggccgctatggcatggccgtgcgcatcgaaggcgacccc
gctttggtcagccccgatttctcgcttgaaaagttcaagaccgcgacacgcgttgtcacg
ccgatcgaacatgtggtgtcggttgatacctccatcatggacgaggtcgatgatctggat
gtcgatgcggaagcagatgcggacaatgctgacaatgaacctaccggcaacggcaatggc
gggcagaaccagcacaatggctctgacgatgacaatgacggcgaagggaaacccaagcgt
cgtcgtcgtcgccggcggcgtcggggtggcaaatccaacggggatgatgctgccaacggt
gaaaacaacggcgatagcaacaccaacggtgacaacggcgatagcgacgcgcccgcgcaa
accgaggcggatactgctggtgccaaagatgacgcgaaaacggatgcgactgcagacgcc
gcttctgatgacgcgaaaccgcaggacaaacccaagcgcacccgtagccggacccgcaaa
cccaaggctgatgccgcggcagaagcgaccgtagacgcggacgccaagacctccgaggac
gcgaaacctgcggagacgacccctgccgacgcggaggccgccgaagacgcgcccaagcca
aaacccaagcggacccgcacgcgcaagcccaaggccgcgcctgtcgaggctgcggaagag
gcacccaagcccgaggaaacacctgcgccaaaagagcagccaacccccgagcccaagccc
gagcctgaggtgacaccagacgcgccgacgcccgagcccgcaaaggagccgacgccgatc
ccgacgccggaacccacgcccgcgcagccgtcccagcccgccgaggtggagcaaacgccg
gccccgaccgaggtgcccgatagcaccccgacggaaatgccgcccgcgcaggaaatccag
ccggagccaccggtcaccgaagtacctcagcccgaggcggccccgcaggcggagcccgaa
aaacccgccaagcccaagcggcgcggctggtggtccttgggcggctaa
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