Sulfitobacter pontiacus: G6548_11085
Help
Entry
G6548_11085 CDS
T06732
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spot
Sulfitobacter pontiacus
Pathway
spot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6548_11085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spot03019
]
G6548_11085
Messenger RNA biogenesis [BR:
spot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G6548_11085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
CDC48_N
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QLL43045
LinkDB
All DBs
Position
complement(2287807..2289474)
Genome browser
AA seq
555 aa
AA seq
DB search
MSSERLIYLPLGGAGEIGMNAYVYGYGKPGKERLIVVDLGVAFPDMDTSPGVDLIIPDIA
WLEERRDQIEAIFITHAHEDHIGAVAHTYDRLRAPIYTRKFTANIAKRKMDEYGHPDDAV
TTVAPWPQQTTVGPFKVGFLPMSHSIPESSSLVIDVAGDRLIHSGDFKIDMTPGVGEPYD
PELWADVSKDGVKALICDSTNVFSQHAGRSEATVGPEIEKLLGTAQGMVVATTFASNVAR
VKTLADAGERAGRSVVLLGRAMKRMVEASLETGVMKDFPPVVSPEEARGIPRENLMLLVT
GSQGERRAASAQLARGKYMGLEMKEGDMFLFSSKTIPGNERGVIKVINAFSEMGVDIVDD
SSGLYHVSGHANRPDLETLHDVVKPQILIPMHGEHRHLREHTKIANAKGMKGVLAVNGMM
IDLSGNEPKVVEYVDSGRTYLDGSTQIGAMDGVVRDRIRMALNGHVTVTVIMDENDEALG
DPWVDAMGLPEQGRSKTSLVDVLEADLAQFLGRANAKTLRDDDKLHDGLKRTVRQSANDE
IGKKPEVTIVVSRLS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgaaagattgatctatctgcccctcggtggggcaggtgaaattggcatgaat
gcctatgtttatggatacgggaaacccggtaaggagcggctgattgttgtcgaccttggc
gtcgccttccccgacatggacacaagccccggcgtggatctgatcatccccgatatcgcc
tggcttgaagaacgccgcgaccagatcgaggcgattttcatcacccacgcccacgaagac
catatcggtgccgtggcccatacctatgaccgcctgcgcgcgccgatctatacgcggaaa
ttcaccgccaatatcgccaagcgcaagatggacgaatacggccaccccgacgatgcggtg
accaccgtggccccttggccgcaacaaacgaccgtagggccgttcaaagttggcttcctg
cccatgtcccactccatccctgaatcgtcgtcgctggtgatcgacgtggccggcgatcgg
ctgatccactcgggcgacttcaagatcgacatgacacccggtgttggtgaaccctacgac
cccgaactttgggccgacgtgtccaaagacggcgtcaaggcgctgatctgtgacagtacc
aacgtcttctcgcagcatgcaggccggtccgaagcgaccgtcgggccagagattgaaaag
ctgctcggcaccgcgcagggtatggtcgtcgcgacgaccttcgcctctaacgtcgcgcgt
gtgaagacgctggcggatgcgggcgaacgggcagggcggtcggttgtgctgctgggacgt
gcgatgaaacgcatggtcgaagcctcgcttgaaaccggcgtgatgaaggacttccccccg
gtcgtgagcccggaagaagcccgcggcatcccgcgcgagaacctgatgctgctggtaaca
ggctcgcaaggggagcgtcgtgcggcgtcggcacagctggcacgcggcaaatacatgggg
ctggaaatgaaggaaggggacatgttcctgttctcctccaaaaccattcccgggaacgaa
cgtggcgtgatcaaggtgatcaacgcattctccgagatgggcgttgatatcgtcgacgac
agctcgggtctgtatcacgtatcgggccacgccaaccgtcccgatctggaaacgctacat
gacgtggtcaagccgcagattctgatcccgatgcatggtgagcaccgccacctgcgtgag
cacaccaaaatcgccaacgccaaggggatgaagggtgttctggccgttaacggcatgatg
atcgatctgtcgggcaacgagcccaaggtcgttgaatatgtcgacagcgggcggacttac
cttgatggctctacccagattggcgcgatggatggcgttgtgcgcgaccgtatccgcatg
gcgctgaacggccacgtcaccgtgactgtcatcatggacgagaatgacgaagccttgggc
gatccttgggtcgatgccatgggtctgccagagcaagggcgatccaagacgtcgctggtg
gacgtgctggaagccgatctggcccagttccttggccgtgcaaacgccaagaccctgcgc
gacgacgacaagctgcacgatgggttgaagcgcactgtgcgtcagtccgccaacgatgag
atcggcaaaaagcccgaggttaccatcgtggtcagccgcctgagctaa
DBGET
integrated database retrieval system
