Sulfitobacter pontiacus: G6548_12255
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Entry
G6548_12255 CDS
T06732
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spot
Sulfitobacter pontiacus
Pathway
spot02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spot00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G6548_12255 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spot03021
]
G6548_12255 (rpoD)
Transcription machinery [BR:
spot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G6548_12255 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
QLL43260
LinkDB
All DBs
Position
complement(2536691..2538673)
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AA seq
660 aa
AA seq
DB search
MAAKDTNEDAKSDDQDAGHSLDMSQAAVKKMIGEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINVIEDEEAEEEDAKGGTEIATTESNRDVALSSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGTQMGDEEETTPVVPTAGTETKPAESTSEVDADGNPISNDDDDEDDDEQANMS
LAAMEAALKPQVLEALDIIADDYVKLSQIQDSRISATLNEDGTFSKTDEEEYQRVRSEIV
ALVNDLHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRKEFVDAYRGYELDPN
WMERMAEKSGRGWQMFIERSSDKVDELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacacgaacgaagacgcgaagtctgacgaccaggatgccggccattcg
cttgatatgagccaagccgccgtcaaaaagatgatcggcgaagcccgcgaaaagggctat
atcacctacgatcagctgaacaccgttctgccccctgaccaagtcagctcggagcagatc
gaggatgtgatgtcgatgctgtccgaaatgggcatcaacgtgatcgaagacgaagaagcc
gaagaagaagacgccaagggcgggacagaaattgcgaccacggaaagcaaccgtgatgtg
gcgctgtcctctggcacgtccgaaaagctggaccgcacggatgaccccgttcgcatgtat
ctgcgcgagatgggatcggttgaactgctaagccgtgagggcgagatcgccattgccaag
cggatcgaggcagggcgcaacacgatgatcgcggggctgtgtgaaagcccgctgaccttc
caggcgatcacgatctggcgcgacgaacttttgtccgaagacattttgctgcgcgatgtc
atcgaccttgaggcgacattcggcacccagatgggcgacgaagaggaaacgactccggtt
gtgccaaccgcgggcaccgagacaaagcccgccgaaagcaccagcgaagtggacgccgac
ggcaacccgatctcgaacgacgacgacgacgaggatgatgacgaacaggccaacatgtcg
ctggccgcgatggaagccgcgctgaagccgcaagtgctggaagcgctcgacatcattgcc
gatgactacgtcaagctgagccaaattcaggacagccggatttcggccaccctgaacgag
gacggcaccttttcgaagaccgatgaggaagaataccagcgcgtccgctccgagatcgtg
gctttggtcaacgacctgcacctgcacaacaaccgtatcgaagcgctgatcgaccagctt
tacggcatcaaccgccgcatcatgcagatcgactctgcgatggtgaagcttgccgatcag
gcgcgcatcaaccgcaaggaattcgtcgacgcctatcgcggctacgagctggaccccaac
tggatggagcggatggccgagaaatccggtcgcggctggcagatgttcatcgaacggtcc
tctgacaaggtggatgagctgcgggctgatatggcgcaggtgggtcaatacgtcggtctt
gatatctctgaattccgccgcatcgtgcagcaggttcagaagggcgagaaagaggcccgt
caggccaagaaagaaatggtcgaggcgaacttgcgtctcgtgatctcgatcgccaagaaa
tacaccaaccgtggcttgcagttccttgatcttattcaggaagggaacatcggcctgatg
aaggccgtcgacaagttcgaataccgtcgcggctataaattctcgacctacgcgacatgg
tggatccgtcaggcgatcacccgttcgatcgccgaccaagcgcgcaccatccgtattccg
gtgcatatgatcgagacaatcaacaagctggttcggaccggccgccagatgctgcacgag
attggccgcgagccgacgccggaggaactggccgagaaactgcagatgccgcttgaaaaa
gtgcgcaaggtgatgaagatcgccaaagagccgatctctcttgaaacgcctattggcgac
gaggaagacagccagcttggtgatttcatcgaggataagaatgccgtgctgccgctcgac
agtgccattcaggaaaacctcaaggagaccacgacacgggttctggccagcctcaccccg
cgcgaggaacgggtgctgcggatgcgcttcggcatcggcatgaacaccgaccacacgttg
gaagaagtcggacagcagttcagcgtgacccgcgaacgtatccgtcagatcgaggcgaag
gcgctgcgcaagctcaagcacccaagccggtcgcgcaagctgcggtcgttcctcgatcag
taa
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