Sphingobium phenoxybenzoativorans: KFK14_10450
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Entry
KFK14_10450 CDS
T07582
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spph
Sphingobium phenoxybenzoativorans
Pathway
spph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFK14_10450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spph03400
]
KFK14_10450 (mfd)
Enzymes [BR:
spph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFK14_10450 (mfd)
DNA repair and recombination proteins [BR:
spph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFK14_10450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUT07755
UniProt:
A0A975KAF0
LinkDB
All DBs
Position
complement(2157306..2160773)
Genome browser
AA seq
1155 aa
AA seq
DB search
MTDLQKIIKAKTPLTLSGVPAGFQPWVLADIARAAPGRTVFVAPDEQLMQAIADTVHWFA
PELDVIRIPAWDCLPYDRASPSLRAASERLAGLHALQTAQRGPQLVLTTINALTQRTLTP
FRIRQLVARLAPGERIAIDKLAQLLQANGYVRTDTVHDAGEYAIRGGIVDLYPGGEPQPL
RLDFFGDEIETVRRFDPSTQRTTENVEGFVLLPASEALLDEESIKRFRSRYRETFGATAT
GDPLYQAVSEGRRLAGMEHWLPLFEERLVPMFEHLGEHTVYVRDHGVTGAAEARFEAIRD
YHANRLEARSANPGAYRPIDPALLYLGSGEWEDAVRTHAIHITSPFHEPESDRVLDFSVD
SARDFAPERAQNVNIYEAVAKHLASLRLGTKKIVIASYSGGARDRLTGLLADHGVKKMVE
ANGWQQALGAAASGNVALVVLPLDHGFTAPDVALLTEQDMLGDRLVRRAKRKKSADAFLQ
ELATLTPGDLVVHADHGIGRYDGIMSIPVGNAPHDCVALGYAGGDKLYVPVENLDVLSRY
GSETDGVALDKLGGEAWQRRKAKMRERIREIAGELLKTAAARALRPAPVAEPDASGYPAF
IDRFPYQETDDQDRAIADVLSDLGEGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVA
LIGPTTLLARQHFNNFEERFKGFPLKVGRLSRLVPAAEAKAVKEGLADGTLDIVVGTHAL
LTKGLEFRRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLREL
SVIQTPPVDRLAVRTYVMPWDGVVIREALLREHYRGGQSFFVVPRIADLPDIEEFLRNEV
PEVRPIVAHGQMSAGEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGL
AQLYQLRGRVGRSKTRAYAYMTTPADRIITETAEKRLKVLSDLDTLGAGFQLASHDLDIR
GAGNLIGDEQSGHIREVGFELYQSMLEEAIMDAKAGGILRDRAKESFSPQITVDAPIMIP
DDYVPDLDLRMGLYRRINELEDRQGIEAFAAELIDRFGKLPAPTQNLLKLIEIKQNCLTA
SVAKIDVGPKGALVTFQNDSFPNPPGLIAYVQKLEGTAKLRPDSKLVITRGWGDSASRLN
GALQLSKGLAKVAAQ
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacctgcagaaaatcatcaaggccaagacaccgcttaccttgtccggcgtcccg
gcggggtttcagccatgggtgctggcggacattgcccgcgccgctccgggccgtaccgta
ttcgtcgcgccagacgaacaattgatgcaggccattgccgacacggttcattggttcgcg
ccggaactggacgtcatccgcattcctgcctgggactgtcttccctacgatcgcgcctcg
ccctctctgcgcgcggcgtcggagaggctggcggggcttcatgcgctgcagaccgcacag
cgcggaccgcaactcgttcttacgacgatcaacgcgctcacccagcgcaccctcacccct
ttccgtatccggcagttggtggcgcggctcgcgccgggtgaacggatcgcaatcgacaag
ctggcgcaactgctgcaggcgaacggctatgtccgcaccgatacggtccatgatgcgggc
gaatatgccattcgcggcggtattgttgatctgtaccccggcggtgagccgcagccattg
cggctcgactttttcggggatgaaattgaaaccgttcgccgctttgatccgtcgacccag
cgcacaaccgaaaatgtggaaggctttgtcctgcttccggcttcggaggccctgctcgat
gaggaaagcattaagcggtttcgcagccgctatcgcgagacttttggcgcaaccgccacc
ggagaccccctttatcaggcagtgagtgagggccggcggctggcgggcatggagcattgg
ttgcccttgttcgaggagcggctggtgccgatgttcgaacatctgggcgagcataccgtc
tatgtgcgcgatcatggcgtaacaggcgcagcggaagcccgtttcgaggcgatcagggat
tatcacgccaaccggctggaggcccggtccgccaaccccggagcatatcgcccgatcgac
cccgccctgctttaccttggcagcggcgagtgggaggatgctgtccgcacccacgccatc
catatcacttcgccattccacgagccggaaagcgacagggtgctcgacttcagcgtcgac
agcgcaagggattttgcgccggaacgcgcgcagaacgtcaatatctatgaggctgtggcg
aagcatctcgcttccctgcgcctcggcaccaaaaaaattgtcatagccagctattcgggg
ggcgcgcgagaccgcctgacaggtcttcttgccgatcatggcgtgaagaagatggtggag
gccaacggttggcagcaggcgctgggcgccgccgcctccgggaatgttgccctggtcgtc
ctgccgctcgatcacggtttcacggcacctgatgtcgcgctgctcaccgaacaggatatg
ttgggcgaccggctcgtgcgccgcgccaagcgcaagaaaagcgctgacgcattcctgcag
gaattggcgaccctcactcctggcgatcttgtcgttcatgcggaccacggtatcggccgc
tatgacggcatcatgtcgatcccggtcggcaatgcgccgcacgactgcgtggcgcttggc
tatgcgggcggcgacaagctctatgttcccgttgaaaatcttgatgttctgtcccgttac
ggctcggaaacggacggcgtcgccctggacaagctgggcggagaggcgtggcagcgccgc
aaggcgaagatgcgcgagcgcatccgggagatcgctggagagttgctcaagacggccgca
gccagagcactgcgccccgcaccggtcgccgaacctgacgcctctggatatccagctttt
atcgatcgtttcccctatcaggaaaccgacgatcaggaccgcgccattgcggatgtctta
agcgaccttggcgagggcaagccgatggaccgcctggtctgcggcgatgtcggattcggc
aagacagaggtggcccttcgcgcagccttcgtcgcggcgatggccgggatgcaagtcgcg
ctcatcggtccgaccacccttctcgcccgccagcacttcaacaatttcgaggaacgcttc
aagggcttcccgctcaaggttggacggctttcccgtcttgtcccggctgccgaggcgaaa
gcagtcaaagagggattggcggacggcacgcttgatatcgttgtaggcacccacgccttg
ctgaccaagggactggagttcagacgcctgggccttgtcatcgtcgacgaggagcagcgc
ttcggcgttacccacaaggaacggctcaagagcctgaagaccgatgtccatgtgctgacg
ctcaccgccacgcccatcccccggaccctgcaaatggcgatgtcgggcctgcgcgaactt
tccgtcattcagaccccgccggtcgaccgcctcgccgtccgtacctatgtcatgccgtgg
gacggggttgttatccgcgaagcgctgctgcgggaacattatcgcggtggccagagcttc
ttcgttgtcccccgcatcgccgacctgcccgacatcgaagaatttttgcggaacgaggtg
cccgaagtgcggcctatcgtcgcccatggacaaatgtctgccggcgaagtcgaggagcgc
atgtctgccttctatgacaagcgctatgatgtgctcctctcgaccactattgttgaaagc
gggcttgatatcccaagcgccaacacgctcatcatccaccgcgctgaccgcttcgggctt
gctcagctttatcagcttcgcggccgggtcggccggtcgaaaacgcgcgcctatgcgtac
atgaccacaccggcagaccgcatcatcacagaaacggcggaaaagcggctaaaggtactc
tcagacctcgacacgctgggcgccgggttccaactcgccagccacgatctcgatattcgc
ggggcgggcaatctgatcggggacgagcagtcgggccatatccgcgaagtcggcttcgaa
ctctaccagtcaatgctggaggaggcgatcatggacgccaaggcgggcggcattctgcgt
gaccgggcgaaggaaagcttctcgccgcagatcactgtcgatgcgccaatcatgattccg
gacgattatgtccccgacctcgacctgcgcatgggcctttatcgccgcatcaacgaattg
gaggatcggcaggggattgaggcttttgccgcagagttgatcgaccggttcggtaaactt
cctgcaccgacccagaatttgctgaagcttattgagatcaagcagaactgcctgacagca
tcggtcgccaagatcgatgtcggcccgaaaggcgcgctcgttaccttccagaacgacagc
ttccctaatccgcccggactcatcgcctatgtccagaaacttgaaggcacggcaaaacta
cgtcctgacagcaagttggttatcacgcgcggctggggcgattccgcgtcgcgcctcaat
ggcgcgcttcaactgtcaaaggggctggcaaaagtcgccgcgcaatga
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