Sphingobium phenoxybenzoativorans: KFK14_12260
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Entry
KFK14_12260 CDS
T07582
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spph
Sphingobium phenoxybenzoativorans
Pathway
spph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFK14_12260 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spph03019
]
KFK14_12260 (rnr)
03016 Transfer RNA biogenesis [BR:
spph03016
]
KFK14_12260 (rnr)
Enzymes [BR:
spph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KFK14_12260 (rnr)
Messenger RNA biogenesis [BR:
spph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KFK14_12260 (rnr)
Transfer RNA biogenesis [BR:
spph03016
]
Prokaryotic type
tRNA degradation factors
KFK14_12260 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
PF0610-like_N
LexA_DNA_bind
PPO1_DWL
Motif
Other DBs
NCBI-ProteinID:
QUT03923
UniProt:
A0A975K2X3
LinkDB
All DBs
Position
complement(2509452..2511749)
Genome browser
AA seq
765 aa
AA seq
DB search
MAPPTRKPSKVKPAGFPTRDQIMDFIATSDTPAGKREIARAFGLKGQEKIALKALLKDMA
DEGLIDIGPARAFHKMGGVPKVTVLRIVDVDGNQLLGVPDKWEGEGIPPPRLRIVERGKR
SALTVGDRILARTEEAGNGWIAHPMKKLAKGSDLMLGVIEAKEGGKLWLRPVDKRIRNAT
PISDAGDAKPGDLVLAEASGRPPRISARITDILGDPFAPKSFSLIAIHKHGIPFVFPDAT
EEEAVRVASLPLHEDKREDLRHLPIVAIDPVDARDFDDAVWAAPDEDPANPGGFRAIVAI
ADVSYYVRPGGSLDREARKRGNSVYFPDRVVPMLPHQLSSDMCSLRAEEDRAAMACHLVI
DAKGKVTSWRFTRAVIRVAANIPYEQAQAAIDGEVENPLLDTALRPLWACWALLAKARDA
RSPLDLDLPERRVVLDENGRIVSVAVRERLDAHRLIEDYMIAANVAAAKALEAKKAPVMY
RIHEPPGREKLVALKEYLKTFDMEFALGQVIQPSTFNRLIAKLGDNEARPQIMEQILRTQ
TQAYYGPQNAGHFGLALGSYAHFTSPIRRYSDLLVHRALVGAYGLELPAPKDKAIPERSS
LSGEDMANMGRVGELISQHERRAMEAERETIDRYVAAFLATRVGEVVECRITGVQNFGFF
ATVEGLGGDGLVPVSTLGAERFFFDEAGKALEGMSSGDRYTVGQHLPLRLVEADPINGAL
RFEIPEGANHLPVRGDRLRGKPLQRRGRPSNIRHIGSARGKHRKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcaccccccacccgcaagccctcaaaggtgaagcccgccggctttcccacccgcgat
cagatcatggatttcatcgcgacctccgatacgcctgcgggcaagcgggagatcgcccgc
gctttcgggctgaaagggcaggaaaagatcgcgctcaaggcgctgctcaaggacatggcc
gatgaagggttgatcgacattggtcccgcccgcgcctttcacaagatgggcggcgtgccg
aaggtgacggtgctgcgcatcgtcgatgtcgatggcaatcagcttctgggcgtgccggac
aagtgggagggggagggcattcccccgccacgcctgcgcattgtggagcgcggcaagcgg
agcgcgctgaccgtcggcgaccgcatcctcgcccgcacggaagaagcgggcaatggctgg
atcgcccacccgatgaagaagcttgccaagggctccgacctcatgctcggcgtgatcgag
gcgaaggagggcggcaagctctggctgcgtcccgtcgacaagcgcatccgcaatgctacg
cccatcagcgacgcgggggacgccaaacccggcgacctggtgctggcggaggcgagcggc
cgtccgccccgcatcagcgcgcgtatcacggatatcctcggcgatcccttcgcgccgaaa
agcttcagcctgatcgcgatccataaacatggtatcccctttgtctttcccgacgccacg
gaggaggaggcagtgcgcgtcgccagccttcccctgcatgaggacaagcgggaggatctg
cgccatttgcctatcgtcgccatcgatcccgtcgatgcccgcgatttcgatgatgcggtc
tgggccgcgccagatgaggaccccgccaatccgggcggtttccgcgccatcgtcgccatc
gctgacgtgtcctattatgtccggcccggcggatccctggacagggaagcgcgcaagcgg
ggcaacagcgtctatttccccgaccgcgtggtccccatgctgccgcatcagctttcttcg
gacatgtgttcattgcgcgccgaggaggaccgggcggcgatggcctgccaccttgttatc
gacgcgaaggggaaggtcacatcctggcgcttcacccgcgccgtcattcgcgtcgccgcc
aatattccctacgagcaagcgcaggcggcgatcgacggcgaggtggaaaacccgttgctc
gacaccgcgcttcgcccgctctgggcgtgctgggcattgttggccaaggcgcgggatgcg
cgcagtccgctcgacctcgacctgccggaacggcgggtcgtgctggatgagaatgggcgg
atcgtcagcgttgccgtgcgggagcggctggatgcccatcgtctgatcgaggactatatg
atcgccgccaatgtcgcggcggccaaggcgctggaagcgaagaaggcgcccgtcatgtac
cgcatccatgagccgccgggacgggaaaagctggtggcgctgaaggaatatctcaagacc
ttcgacatggagttcgcgctggggcaggtcatccagccgtcgaccttcaaccgcctgatc
gcgaagcttggcgacaatgaggcgcggccgcagatcatggagcagatactgcgcacccag
acccaggcttattatggtccgcaaaatgcaggccatttcggtctggctctggggtcatac
gcgcatttcacctcgccgatccgccgctattcggacctgcttgtccaccgcgcgcttgtt
ggcgcctatggcctcgaactgcctgcgccgaaggacaaggcgatcccggagagaagctcg
ctcagtggcgaggatatggcgaatatgggccgcgtcggcgagctcatcagccagcatgaa
cggcgagcgatggaagcggagcgcgaaacgatcgaccgctatgtcgccgccttcctggcg
acgcgcgtgggcgaggtggttgagtgccgcatcaccggcgtccagaatttcggtttcttc
gcgacggtggaggggcttggcggcgacgggctggtgcctgtgtcgacattgggcgcggag
cgtttcttctttgacgaggcgggcaaggcgctggagggcatgagcagcggcgaccgctat
accgtcgggcagcatcttccgctgcggctggtggaggccgacccgatcaacggcgcgctg
cgcttcgaaattcccgaaggcgcgaaccatctgccggtgcgcggcgaccggttgcggggc
aaaccattgcaaagacggggccgcccgtcgaatatccggcatatcggcagcgcgcggggc
aagcatcgcaagaagtga
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