Sphingobium phenoxybenzoativorans: KFK14_23630
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Entry
KFK14_23630 CDS
T07582
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spph
Sphingobium phenoxybenzoativorans
Pathway
spph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFK14_23630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spph03019
]
KFK14_23630
03009 Ribosome biogenesis [BR:
spph03009
]
KFK14_23630
Enzymes [BR:
spph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KFK14_23630
Messenger RNA biogenesis [BR:
spph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KFK14_23630
Ribosome biogenesis [BR:
spph03009
]
Prokaryotic type
rRNA processing factors
KFK14_23630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
YL1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QUT08428
UniProt:
A0A975Q4A3
LinkDB
All DBs
Position
complement(4767996..4770671)
Genome browser
AA seq
891 aa
AA seq
DB search
MLIDARHREETRVAIVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPREDKLALLAEEAKHAAEEAALRADDEDDDDHDHDHGDVMDVD
HPAHDEDEDAHEAAEGEEASARPARPSRNNEDAADELRRKRMSLRRRYKIQDVIKRRQVL
LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIIADMN
LPSTMGCIVRTAGLQRTKVEIKRDFDYLARLWDEIRENTLKAAAPALIHNDSDLIKRAIR
DIYNKDIEEVIVEGEHGYKAARDFMKLLMPSHARRVKQYADAVSLFQRFGVEDQLAAMYH
PVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLRDMA
GLVVIDFIDMEVNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVLEAS
TRECPHCEGTGLVRTASSAGLSALRMLEEEAARGRGTFITLRASQEAAFYVLNNKRRELD
EIESRYGVSITILPDGEVEGARMSVEASGPRPTQVVTYAPIVEEDDDLDLLEEELDEEEE
AEEASEDSERRDSRSEEDRDGEGGRRGRRRRRRGRRNRRDGEQGEGASTEGGAEAADGEG
ESDAGELDAEAGEVEQGEVTAEEGGEPRRRGRRGRRGGRRRRGGEGEGTAAEHGAEAESV
SEDAPAAEPVAEEAAPAEEAPVEAEAPKTRRRPRARKAAAAAEAPVEAAAVEAEAPAEAP
VAEAAEAPAKPKRSRAKKAAPAEPAAEAPVAEEAPAPESAPAAKPKRSRAKKAAPVAEEA
APAEETPEAEAPVSSLASANAGEFVSGAPADEETAEDGTPRRGWWQRTFGA
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgatgcgcgccaccgggaagaaacccgcgtcgccatcgtcaagggaaaccgg
atcgaggaatttgatttcgaatccgctgagcacaagcagctcaaggggaatatctatctc
gccaaggtaacacgggtcgaaccgtcgcttcaggcggcgttcgtcgattatggcggcaac
cgccatggcttcctggccttttcggaaatccaccccgactattaccagatcccgcgtgag
gacaagctggcgctgctggccgaggaggcgaagcacgccgccgaggaagccgcgctgcgc
gccgacgacgaggatgatgacgatcatgatcacgatcatggcgatgtgatggatgtcgat
catcccgcgcatgacgaggatgaggacgcgcatgaggcggcagagggcgaggaagcatcc
gcgcgcccggcccggccgtcgcgcaataatgaggatgccgccgacgaactgcgccgcaag
cgcatgtcgctgcgccgccggtacaagatccaggacgtcatcaagcgccgtcaggtgctg
ctggtccaggtcgtcaaggaggagcgcggcaacaagggcgcggccctgaccacctatctg
tcgctcgccggccgttactgcgtgttgatgcccaacacgtcgcatggcggcggtatcagc
cggaagatcagcaacgccgccgaccgcaagcggttgaagtcgatcatcgccgacatgaac
ctgccctcgaccatgggctgtatcgtccgcaccgcgggcctgcagcgcaccaaggtcgag
atcaagcgcgacttcgactatctcgcccgcctgtgggacgagatccgcgagaatacgctg
aaggccgccgcgcccgcgctgatccataatgacagcgacctcatcaagcgggcgatccgc
gatatctacaacaaggatatcgaggaagtgatcgtcgagggcgagcatggctataaggcc
gcgcgcgacttcatgaagctgctgatgcccagccatgcgcggcgggtgaagcaatatgcc
gacgcggtgtcgctgttccagcgcttcggcgtcgaggatcagcttgcggccatgtaccac
ccggtcgtgcagctcaaatccggcggttatctggtcatcaacccgacggaagccttggtg
tcgatcgacatcaactccggccgttcgacccgcgaacatggcatcgagcagaccgccgtc
gccaccaatctggaagccgcgcgagagatcgcccggcaactgcgcctgcgcgacatggcg
ggccttgtcgtcatcgacttcatcgacatggaggtgaactccaacatccgcaaggtcgag
aaggcgatgaaggaagcgctgaaggacgatcgcgcccgcatccaggtcggccgcatttcc
ggcttcggcctgatggaaatgagccgccagcgcctgcgcaccggcgtgctggaagcgtcg
acccgcgaatgcccgcattgcgagggtaccggccttgtccgcacggcgtcatcggccggt
ctgtcggcgctgcgcatgctggaggaggaggctgcgcgcggccgcggcaccttcatcacg
ctgcgcgccagccaggaggcggccttctacgtcctcaacaacaagcgccgcgagctggac
gagatcgaaagccgttatggtgtgtcgatcaccatcctgcccgatggcgaggttgagggc
gcgcgcatgtcggtggaggccagcggtccccgtccgacgcaggtcgtgacctatgcgccg
atcgtcgaggaagatgacgatctggatctgcttgaggaggagctggacgaggaggaggaa
gccgaggaagcttccgaagactccgagcgccgggactcgcgcagtgaggaagatcgcgac
ggggagggcggccgccgcggccgccgccgccgccgccgtggccgccgcaaccgccgtgac
ggcgaacagggcgaaggcgcatccactgagggtggcgcagaagccgccgatggcgaaggc
gagagcgacgccggggaactggacgccgaagccggtgaagtcgaacagggcgaagtgacc
gccgaagaaggcggcgaaccgcgccgccgtggccgtcgcggccgccgtggaggccgccgc
cgtcgcggtggcgaaggtgagggcactgccgccgagcatggcgctgaggccgaatcggtc
agcgaggacgcgcctgccgcagagccggtggcggaagaagctgctccggccgaggaagcg
ccggttgaagccgaagcgcccaagacccgccgccgtccgcgcgcccgcaaggctgccgcc
gctgccgaagcgccggtagaggcggccgcggttgaggcggaagcgcccgccgaggctccc
gtggccgaagcggcggaagcgcctgcgaaaccgaagcgcagccgtgcgaagaaggcggct
cccgccgaacccgccgccgaggctcctgtggccgaggaagcgcctgccccggaatcggcg
cccgccgccaagcccaagcgcagccgcgccaagaaggccgcgcccgtggccgaggaagcg
gctccggcagaggaaacgccagaggcggaagctccggtctccagcctcgccagcgccaat
gcgggcgagttcgtcagcggcgcgcccgccgatgaggaaaccgcggaggacggcacgccg
cgtcgcggctggtggcagcgcaccttcggcgcatag
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