Salmonella enterica subsp. enterica serovar Paratyphi B: SPAB_04911
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Entry
SPAB_04911 CDS
T00628
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spq
Salmonella enterica subsp. enterica serovar Paratyphi B
Pathway
spq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAB_04911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spq03019
]
SPAB_04911
03400 DNA repair and recombination proteins [BR:
spq03400
]
SPAB_04911
Enzymes [BR:
spq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPAB_04911
Messenger RNA biogenesis [BR:
spq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPAB_04911
DNA repair and recombination proteins [BR:
spq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPAB_04911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ABX70210
UniProt:
A0A3Z1EBW8
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All DBs
Position
4108027..4109856
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIP
ALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLY
IAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLG
LVMQNIAQHSALQLTDAARPVLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaatcaggggccaaacaggttttgcaggaaacc
tttggctaccaacagtttcgcccgggccaggaagcgattattgatactgcgctctccggt
cgcgactgtctggtcgtcatgcccaccggcggcggcaaatctctgtgctatcaaatcccc
gcgttgttgctggatggattgaccgtcgtcgtttcgcccttaatctcgttgatgaaagac
caggtcgatcagctactggcgaacggtgtggcggcggcgtgcctgaactccactcaaagc
cgcgagcagcagcttgaggtgatggcggggtgccgtaccggacagattcgtctgctgtat
attgcgccggaacgcctgatgctggacaactttcttgatcatctggcgcactggaatccg
gtattgctggcggtggatgaagcgcactgtatctcgcaatgggggcatgatttccgtccg
gaatatgcggctctcggtcagcttcgccagcgttttcccgctttgccgtttatggcattg
accgccaccgccgacgacaccacgcgccaggatattattcgtctgcttgggcttaacgat
ccgttaatccagatcagtagctttgaccgaccgaatatccgctacatgctgatggagaag
tttaagccgctcgaccagctaatgcgctatgttcaggagcaacgcggcaaatcgggtatc
atctactgtaacagtcgggcgaaagtggaagataccgccgcgcgcttgcaaagtcgcggc
attagcgcggcggcctatcatgcggggctggaaaacgctattcgcgccgatgtgcaggaa
aaatttcagcgcgacgatctgcaaatcgtggtggcgaccgtcgcttttggaatgggcata
aacaaacctaacgtacgtttcgtcgtgcatttcgatatcccgcgtaatattgaatcctac
tatcaggaaacgggccgcgccgggcgcgacggactgcctgcggaagccatgctattttac
gatccggctgatatggcctggctacgtcgttgtctggaagagaaaccagccggacagctt
caggatattgaacggcataaactgaatgcgatgggcgcttttgccgaagcgcaaacctgc
cgccgcctggtattgcttaattactttggcgaaggccgacaagaaccgtgcggcaactgc
gatatctgtctcgatccgcccaaacaatatgatggcttaaacgatgcccagattgcgctt
tctaccattggtcgggttaaccagcgttttggcatgggctacgttgtcgaggtgatccgc
ggcgcgaataaccaacgcatccgcgatttcggtcatgacaaactcaaggtttatggcatg
ggacgcgaaaagagccatgagcactgggtgagcgtgattcgccagctcattcatctgggg
ctggtaatgcaaaatattgcgcagcactccgcattacagttgacggatgccgcgcgtccg
gtgctccgtggggacgttccgctaaagcttgcggtgccgcgcatcgtcgccctcaaaccc
cgcgtgatgcagaaatcgttcggcggtaattacgatcgcaaattgttcgctaagttgcgc
aagctgcgtaaagctatcgctgatgaagagaatatcccgccgtatgtggtctttaacgac
gccacgttgatagaaatggcggaacagatgccggtttccgccagcgagatgttaagcgtt
aacggggttgggatgcgcaaactggagcgcttcgggaaagaatttatggcgctcatccgc
gcgcatgtcgatggtgatgacgaagagtag
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