Streptococcus pneumoniae R6 (avirulent serotype 2): spr0125
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Entry
spr0125 CDS
T00060
Name
(GenBank) Conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spr
Streptococcus pneumoniae R6 (avirulent serotype 2)
Pathway
spr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
spr0125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spr03019
]
spr0125
Messenger RNA biogenesis [BR:
spr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
spr0125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AAK98929
UniProt:
Q8DRH7
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All DBs
Position
complement(134636..136468)
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AA seq
610 aa
AA seq
DB search
MPAQNLRAVSLLANLSKKIAQSTISSISNSCLTNCSITKKKLAPSKLRSSNMAYTLKPEE
VGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSYIVDNIDRVK
AVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRNAKLYEINHNTEL
TFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLHRMAALGEEG
VLCLLSDSTNAEVPTFTNSEKVVGQSIMKIIQGIEGRIIFASFASNIFRLQQATEAAVKT
GRKIAVFGRSMEKAIVNGIDLGYIKAPKGTFIEPNEIKDYPAGEVLILCTGSQGEPMAAL
SRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINIISEAGVEVIHGKVNNIHTSGH
GGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAVDTGVEKDNIFIMSNGDVLALTADS
ARIAGHFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFKSQMILSGPDILS
RGFVYMRESGDLIRQSQRILFNAIRIALKNKDASVQSVNGAIVNAIRPFLYENTEREPII
IPMILTPDEE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgccagctcagaacttgagggccgtatcactgctcgccaacttgtcgaagaaaatcgcc
cagagtacaatatcgagtatatcgaactcttgtctgacaaattgctcgattacgaaaaag
aaactggcgccttcgaaattacggagttctaatatggcctacactcttaaacctgaagaa
gtcggcgtttttgccatcggtggtctaggagaaatcgggaaaaacacttacggaattgaa
taccaagacgagattatcatcgtcgatgctgggattaaattcccagaagatgacttgctt
ggtatcgactatgtcattcctgactactcttacatcgtagacaatatcgaccgcgtcaag
gctgttttaatcacacacggacacgaggaccacattggtgggattccgttcctactcaag
caagcaaatgtccctatttatgctggaccgcttgccttggctttgatccgtgggaaactc
gaagaacacggcctcttgcgcaacgccaaactttacgaaatcaaccacaacaccgagttg
acctttaaaaatctcaaggcaactttctttagaacgactcactctattccagagcctttg
gggattgtcattcatactcctcaagggaaaatcgtctgtacgggtgactttaagttcgac
tttactccagttggagaacctgcggacttgcatcgtatggctgcgcttggtgaagaaggc
gtgctctgtctcctgtctgactcgacaaatgcggaagtaccaacctttaccaactctgaa
aaagtcgttggtcagtccattatgaagattatccaaggtattgaaggacgtatcatcttt
gcatcctttgcctcaaatatcttccgtctccagcaggcaacagaagctgctgttaagact
ggacgcaagattgcggtctttggtcgttctatggaaaaggccattgtcaacggaatcgat
cttggctacatcaaagctcctaagggaacctttatcgagccaaatgaaatcaaagattat
cctgcaggagaagttcttatcctctgtacaggtagtcagggtgagcctatggcagccctc
tctcgtatcgccaacggaacccaccgtcaagtacaattacaaccaggtgataccgttatc
ttctcttctagtcccatccctggaaacactactagcgtcaacaagctgattaacatcatt
tctgaagctggtgtcgaagttatccacggtaaagtgaacaatatccatacatctggacac
ggtggccagcaagagcaaaaactcatgctccgcttgattaagccaaaatacttcatgcct
gtccacggtgaataccgcatgcaaaaagtccacgctggactagcagtggatactggtgtt
gagaaggacaatatctttatcatgagcaatggcgatgtgcttgcccttactgctgactca
gctcgtatcgcaggtcatttcaacgcccaagatatctatgtcgatggaaatcgtatcggt
gaaattggcgcagctgtcctcaaagatcgtcgcgatctatctgaagacggtgtcgttcta
gcagtcgcaactgttgacttcaaatcgcagatgattctgtctggcccagatatcctcagc
cgaggctttgtctacatgagagagtctggagacttgattcgccaaagccagcgtatcctc
ttcaatgccattcgtatcgcactgaaaaataaggatgctagcgtgcaatctgtcaatggt
gccattgtcaacgctattcgccccttcctctatgaaaataccgaacgtgaaccgatcatc
atcccgatgatcctcacaccagatgaagaataa
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