KEGG   Streptococcus pneumoniae R6 (avirulent serotype 2): spr1776
Entry
spr1776           CDS       T00060                                 
Symbol
rpoC
Name
(GenBank) DNA-dependent RNA polymerase
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
spr  Streptococcus pneumoniae R6 (avirulent serotype 2)
Pathway
spr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    spr1776 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spr03021]
    spr1776 (rpoC)
   03400 DNA repair and recombination proteins [BR:spr03400]
    spr1776 (rpoC)
Enzymes [BR:spr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     spr1776 (rpoC)
Transcription machinery [BR:spr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     spr1776 (rpoC)
DNA repair and recombination proteins [BR:spr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      spr1776 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Dehydratase_LU
Other DBs
NCBI-ProteinID: AAL00579
UniProt: Q8DNF1
LinkDB
Position
complement(1744311..1747988)
AA seq 1225 aa
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYRGIVCDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLL
KQVDLEKEIAELKEELKTATGQKRVKAIRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMLQLDGGRFASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAYRNGYVHLHSRVGI
ATDSLNKPWTEEQRHKVLLTTVGKILFNDIMPEGLPYLQEPNNANLTEGVPAKYFLPLGG
AIKEAISNLELNPPFKKKNLGNIIAEIFKRFRTTETSALLDRMKNLGYHHSTLAGLTVGI
ADIPVVDDKAEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLIANQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRSIAEGKEMIESLE
ERLNGRYTKKTVKHPETGAVIIGPNELITEDKAREIVNAGVEEVTIRSVFTCNTRRGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVVPFTARMRVEVGGQV
ARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPHAVNEEEYLNPPV
EEEGNEETTEVVVDTAVETVEETVE
NT seq 3678 nt   +upstreamnt  +downstreamnt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagtaaagtc
cgttcatggtcttatggagaagtcaaaaaacctgaaacaatcaattatcgtaccttgaaa
ccagaacgtgaaggactctttgatgaagtgatctttggtcctacaaaagactgggaatgt
gcttgtggtaagtacaaacgcattcgttacagaggaattgtttgtgaccgctgtggggtt
gaagtaacgcgtacgaaagttcgtcgtgagcgtatgggacatatcgaattgaaagctcct
gtatctcacatctggtacttcaaggggattccaagccgtatgggcttgacccttgatatg
agccctcgtgccctcgaggaagttatctactttgcggcttatgtggtgattgatcctaag
gatacaccacttgagcacaagtctatcatgacagagcgcgaataccgagagcgcttgcgc
gaatatggttatggttcatttgttgctaagatgggtgcggaagccatccaagaccttttg
aagcaagtagatcttgaaaaagaaattgctgaactcaaagaagaattgaaaactgctact
ggacaaaaacgtgtcaaagccatccgtcgtttggatgttttggatgccttttacaagtct
ggaaacaaacctgaatggatgattcttaacatccttccggttatcccaccagatcttcgt
ccaatgttgcagttggatggtggccgttttgcctcatctgacttgaatgacctttaccgc
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgagttaaatgcaccaggtatc
atcgttcaaaatgagaagcgtatgcttcaagaagcagttgacgctttgattgacaatggt
cgtcgtggtcgtccaatcacaggaccaggtagccgtccattgaaatcattgagccacatg
cttaaaggtaaacaaggacgcttccgtcaaaacttgctcggtaaacgtgttgacttctca
ggacgttccgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggcgattgaactctttaaaccatttgtcatgcgtgaaatcgttgcccgtgatatc
gtgcaaaacgtcaaagcagctaaacgcttggtggaacgcggagatgagcgtatctgggat
atccttgaagaagtgattaaagaacacccagtgcttttgaaccgcgcaccgacccttcac
cgtttgggtatccaagccttcgagccagtcttgattgatggtaaggctcttcgcttgcac
ccacttgtctgtgaagcctacaatgctgactttgacggggaccaaatggccatccacgta
ccactttcagaagaagcacaagcagaagctcgtatcctcatgctagctgctgagcacatc
ttgaacccgaaagatgggaaaccggtagttactccatctcaggacatggttttgggtaac
tactacttgaccatggaagaagctggtcgcgaaggtgaaggaatggtcttcaaagaccgt
gacgaagcggttatggcttaccgcaatggttatgttcacctccactcacgtgttggtatc
gcaacagacagcctcaacaagccttggacagaagagcaaagacataaggtcttgcttaca
acagttggtaaaattctcttcaacgatatcatgccagaggggctaccatacttgcaagaa
ccaaacaatgccaacttgacagaaggtgttccagctaaatacttcttgccacttggtgga
gctatcaaggaagctatcagcaatcttgagctcaaccctccattcaagaagaaaaacctc
ggaaatatcatcgctgaaatcttcaaacgtttccgtacgacagaaacttctgccctactt
gaccgcatgaagaacctcggttaccaccactcaactcttgcaggattgacagtgggtatt
gccgatatcccagtcgttgatgacaaggctgaaatcattgaagaatcacacaaacgtgtc
gaacaaatcaccaaacaattccgtcgtggtatgatcacagacgacgagcgttacaatgct
gttacagctgaatggcgtgctgcccgtgaaaaacttgagaaacgcttgattgctaatcaa
gatcctaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctcaaac
ttctcacagcttgccggtatgcgtggtctgatggctgctccgaatggacgtatcatggaa
ttgccaatcctttcaaacttccgcgaaggtttgtcggtattggaaatgttcttctcaact
cacggtgctcgtaaaggtatgaccgatacggcccttaagacagccgactcaggttacttg
actcgtcgtttggtcgacgttgcccaagacgttatcatccgtgaggacgactgtggaact
gaccgtggtctcttgatccgttctatcgcagaaggaaaagagatgatcgagtctctcgaa
gagcgtctcaacggtcgttacactaagaaaactgttaaacatccagaaactggtgcagtg
attattggtccaaatgaattgattacagaagacaaggcgcgtgaaattgtcaatgctggt
gtggaagaagtgactatccgttctgtatttacatgtaacactcgtcgcggtgtctgccgt
cactgttacggtatcaacttggcgactggtgatgcggttgaagttggtgaagcagttggt
acaatcgctgcccaatctatcggggaacctggtacacagcttacaatgcgtaccttccac
acaggtggggttgcctcaaataccgatatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatcctaaaggggaagcggttattacagaggttaaaggacaagttact
gctatcgaagaagatgcatcaactcgtaccaagaaagtctttgttaagggtgaaactggc
gaaggtgaatatgtcgttccatttacagctcgtatgcgtgtcgaagttgggggccaagta
gcgcgtggtgctgctctgacagaaggttctatccaaccaaaacgtctccttgcagttcgt
gatgtcttgtcagttgaaacgtaccttctcggtgaagtacaaaaagtttaccgtagccaa
ggggtagaaatcggtgacaaacacatcgaggtaatggttcgtcaaatgatccgtaaagtc
cgtgtcatggatccaggtgatacagatcttctcatgggtaccctcatggatatcaatgac
tttacagatgccaacaaagatgtccttatcgcaggtggagttccagcgacaggtcgccca
gtccttatgggaattaccaaagcctcacttgaaacaaacagtttcttgtcagcggcttcc
ttccaggaaacaactcgtgtccttactgacgcagctatccgtggtaagaaagaccatctc
cttggacttaaagaaaatgttatcatcggtaagatcatcccagctggtactggtatggcc
cgttaccgtaaccttgaaccacatgctgtcaacgaagaagaataccttaatcctccagta
gaggaagaaggaaatgaagaaacaacagaagtagttgtggatactgccgttgaaactgtg
gaagaaacagtagaataa

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